Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1J9H BPC Identified: 19 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
dsRNA 1J9H 1!A:18!B G:C WC [cWW][XIX] 10.66 51.17; 55.51 4.34 -20.6 0.17 20.98
dsRNA 1J9H 2!A:17!B U:A WC [cWW][XX] 10.22 58.59; 57.08 1.51 -22.7 0.16 25.02
dsRNA 1J9H 3!A:16!B G:C WC [cWW][XIX] 10.71 54.33; 54.58 0.25 -5.02 0.0 8.71
dsRNA 1J9H 4!A:17!B U:A pfS* [cWS][-] 6.14 61.72; 121.99 60.27 42.37 1.02 35.89
dsRNA 1J9H 5!A:15!B C:G WC [cWW][XIX] 10.59 55.81; 57.3 1.49 -0.7 0.01 3.86
dsRNA 1J9H 6!A:14!B G:C WC [cWW][XIX] 10.61 56.42; 55.71 0.71 0.79 0.02 3.03
dsRNA 1J9H 7!A:12!B C:G WC [cWW][XIX] 10.72 54.41; 54.03 0.37 -4.83 0.02 10.86
dsRNA 1J9H 8!A:13!B A:U pfS* [cWS][-] 6.27 118.87; 60.5 58.37 42.25 0.92 37.1
dsRNA 1J9H 8!A:11!B A:U WC [cWW][XX] 10.28 54.72; 58.22 3.5 -21.77 0.39 27.33
dsRNA 1J9H 9!A:10!B C:G WC [cWW][XIX] 10.63 54.98; 50.63 4.35 -18.49 0.07 20.2
dsRNA 1J9H 19!C:36!D G:C WC [cWW][XIX] 10.65 52.23; 55.19 2.96 -17.27 0.02 19.57
dsRNA 1J9H 20!C:35!D U:A WC [cWW][XX] 10.22 58.53; 57.93 0.6 -21.22 0.23 25.08
dsRNA 1J9H 21!C:34!D G:C WC [cWW][XIX] 10.74 52.87; 54.33 1.46 -2.96 0.0 11.82
dsRNA 1J9H 23!C:33!D C:G WC [cWW][XIX] 10.61 57.4; 55.17 2.22 3.45 0.06 2.88
dsRNA 1J9H 24!C:32!D G:C WC [cWW][XIX] 10.66 56.08; 55.23 0.85 5.1 0.14 1.07
dsRNA 1J9H 25!C:30!D C:G WC [cWW][XIX] 10.71 54.14; 53.16 0.98 -1.45 0.04 10.41
dsRNA 1J9H 26!C:31!D A:U pfS* [cWS][-] 6.09 124.01; 61.37 62.63 41.2 1.0 35.28
dsRNA 1J9H 26!C:29!D A:U WC [cWW][XX] 10.1 58.55; 60.04 1.49 -21.17 0.3 26.55
dsRNA 1J9H 27!C:28!D C:G WC [cWW][XIX] 10.6 56.03; 51.81 4.22 -20.27 0.02 22.41