Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1JBR
BPC Identified: 29
Ambiguities: 0
| rRNA |
1JBR |
0!C:30!F |
G:C |
WC [cWW][XIX] |
10.61 |
55.07; 56.11 |
1.04 |
-6.22 |
0.32 |
11.48 |
| rRNA |
1JBR |
1!C:29!F |
C:G |
WC [cWW][XIX] |
10.52 |
53.55; 56.17 |
2.62 |
-11.52 |
0.04 |
14.7 |
| rRNA |
1JBR |
2!C:28!F |
G:C |
WC [cWW][XIX] |
10.43 |
54.56; 59.28 |
4.72 |
-9.36 |
0.05 |
11.34 |
| rRNA |
1JBR |
3!C:27!F |
C:G |
WC [cWW][XIX] |
10.45 |
55.47; 53.74 |
1.73 |
-6.55 |
0.25 |
9.18 |
| rRNA |
1JBR |
4!C:26!F |
U:A |
WC [cWW][XX] |
10.48 |
57.72; 53.99 |
3.74 |
-4.8 |
0.26 |
9.66 |
| rRNA |
1JBR |
5!C:25!F |
C:G |
WC [cWW][XIX] |
10.65 |
53.88; 54.52 |
0.64 |
1.41 |
0.26 |
12.27 |
| rRNA |
1JBR |
6!C:24!F |
C:G |
WC [cWW][XIX] |
10.55 |
55.32; 55.53 |
0.21 |
-8.14 |
0.64 |
20.01 |
| rRNA |
1JBR |
7!C:23!F |
U:C |
sWC [---][-] |
10.5 |
82.14; 25.33 |
56.81 |
3.66 |
0.6 |
14.68 |
| rRNA |
1JBR |
8!C:22!F |
C:C |
S [---][-] |
8.69 |
101.98; 3.73 |
98.25 |
115.13 |
0.17 |
12.21 |
| rRNA |
1JBR |
9!C:21!F |
A:A |
rS* [tHH][-] |
11.04 |
8.04; 16.1 |
8.05 |
-139.41 |
0.48 |
11.15 |
| rRNA |
1JBR |
10!C:20!F |
G:A |
S(bp:N1-O2P)_3 [---][-] |
10.95 |
87.04; 61.32 |
25.72 |
-171.51 |
0.28 |
7.07 |
| rRNA |
1JBR |
10!C:11!C |
G:U |
pS* [cHS][-] |
6.65 |
145.92; 54.21 |
91.71 |
13.62 |
0.4 |
10.8 |
| rRNA |
1JBR |
11!C:20!F |
U:A |
rH_1 [tWH][XXIV] |
9.52 |
29.01; 24.25 |
4.76 |
-177.91 |
0.01 |
8.84 |
| rRNA |
1JBR |
12!C:19!F |
A:G |
S [tSH][XI] |
9.34 |
5.0; 97.51 |
92.5 |
-26.79 |
0.01 |
6.24 |
| rRNA |
1JBR |
13!C:18!F |
C:G |
WC [cWW][XIX] |
10.48 |
53.41; 51.47 |
1.94 |
-7.39 |
0.49 |
4.04 |
| rRNA |
1JBR |
0!D:30!D |
G:C |
WC [cWW][XIX] |
10.59 |
53.63; 54.29 |
0.66 |
-10.13 |
0.17 |
11.62 |
| rRNA |
1JBR |
1!D:29!D |
C:G |
WC [cWW][XIX] |
10.71 |
54.89; 57.78 |
2.88 |
-6.55 |
0.19 |
12.44 |
| rRNA |
1JBR |
2!D:28!D |
G:C |
WC [cWW][XIX] |
10.5 |
52.51; 58.84 |
6.32 |
-7.35 |
0.13 |
10.73 |
| rRNA |
1JBR |
3!D:27!D |
C:G |
WC [cWW][XIX] |
10.49 |
57.43; 54.62 |
2.81 |
-6.19 |
0.33 |
12.44 |
| rRNA |
1JBR |
4!D:26!D |
U:A |
WC [cWW][XX] |
10.48 |
54.01; 55.36 |
1.36 |
-3.92 |
0.09 |
8.82 |
| rRNA |
1JBR |
5!D:25!D |
C:G |
WC [cWW][XIX] |
10.34 |
56.98; 58.31 |
1.33 |
-0.22 |
0.37 |
17.4 |
| rRNA |
1JBR |
6!D:24!D |
C:G |
WC [cWW][XIX] |
10.33 |
58.94; 57.76 |
1.18 |
-4.78 |
0.26 |
14.2 |
| rRNA |
1JBR |
7!D:23!D |
U:C |
sWC [---][-] |
10.51 |
82.33; 28.34 |
53.99 |
6.29 |
0.48 |
24.66 |
| rRNA |
1JBR |
8!D:22!D |
C:C |
S [---][-] |
9.18 |
98.06; 2.71 |
95.35 |
124.6 |
0.98 |
22.86 |
| rRNA |
1JBR |
9!D:21!D |
A:A |
rS* [tHH][-] |
11.18 |
6.75; 15.91 |
9.16 |
-128.48 |
0.91 |
15.9 |
| rRNA |
1JBR |
10!D:11!D |
G:U |
pS* [cHS][-] |
6.89 |
147.53; 48.78 |
98.75 |
12.9 |
0.14 |
7.38 |
| rRNA |
1JBR |
11!D:20!D |
U:A |
rH_1 [tWH][XXIV] |
9.97 |
29.83; 24.68 |
5.14 |
-163.52 |
0.86 |
18.32 |
| rRNA |
1JBR |
12!D:19!D |
A:G |
S [tSH][XI] |
9.54 |
6.07; 99.75 |
93.68 |
-10.99 |
0.49 |
10.6 |
| rRNA |
1JBR |
13!D:18!D |
C:G |
WC [cWW][XIX] |
10.61 |
54.69; 53.52 |
1.17 |
-5.5 |
0.23 |
10.13 |