Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1JBS
BPC Identified: 28
Ambiguities: 0
| rRNA |
1JBS |
1!C:29!C |
C:G |
WC [cWW][XIX] |
10.77 |
53.95; 52.35 |
1.59 |
-10.91 |
0.27 |
10.54 |
| rRNA |
1JBS |
2!C:28!C |
G:C |
WC [cWW][XIX] |
10.46 |
55.27; 56.14 |
0.87 |
-8.22 |
0.0 |
5.83 |
| rRNA |
1JBS |
3!C:27!C |
C:G |
WC [cWW][XIX] |
10.35 |
57.22; 54.62 |
2.6 |
-6.12 |
0.27 |
7.34 |
| rRNA |
1JBS |
4!C:26!C |
U:A |
WC [cWW][XX] |
10.34 |
55.36; 58.72 |
3.37 |
-1.38 |
0.55 |
10.8 |
| rRNA |
1JBS |
5!C:25!C |
C:G |
WC [cWW][XIX] |
10.53 |
57.78; 55.82 |
1.96 |
-1.31 |
0.22 |
12.79 |
| rRNA |
1JBS |
6!C:24!C |
C:G |
WC [cWW][XIX] |
10.55 |
56.4; 54.53 |
1.87 |
-1.81 |
0.02 |
1.76 |
| rRNA |
1JBS |
7!C:23!C |
U:C |
sWC [---][-] |
10.64 |
84.75; 24.15 |
60.6 |
15.24 |
0.59 |
14.73 |
| rRNA |
1JBS |
8!C:22!C |
C:C |
S [---][-] |
9.1 |
103.14; 3.35 |
99.78 |
103.27 |
0.1 |
11.62 |
| rRNA |
1JBS |
9!C:21!C |
A:A |
rS* [tHH][-] |
11.03 |
10.43; 13.95 |
3.52 |
-135.04 |
0.7 |
15.3 |
| rRNA |
1JBS |
10!C:11!C |
G:U |
pS* [cHS][-] |
6.8 |
142.31; 52.57 |
89.74 |
23.44 |
0.88 |
20.19 |
| rRNA |
1JBS |
11!C:20!C |
U:A |
rH_1 [tWH][XXIV] |
9.56 |
29.38; 22.34 |
7.04 |
-164.53 |
0.81 |
22.61 |
| rRNA |
1JBS |
11!C:19!C |
U:G |
S*(pb:O2P-N1) [---][-] |
9.86 |
20.57; 69.62 |
49.05 |
97.64 |
2.59 |
18.5 |
| rRNA |
1JBS |
12!C:19!C |
A:G |
S [tSH][XI] |
9.32 |
8.81; 100.42 |
91.61 |
-10.34 |
0.21 |
7.77 |
| rRNA |
1JBS |
13!C:18!C |
C:G |
WC [cWW][XIX] |
10.7 |
52.71; 54.02 |
1.31 |
-1.98 |
0.07 |
11.62 |
| rRNA |
1JBS |
1!D:29!D |
C:G |
WC [cWW][XIX] |
10.68 |
52.93; 53.12 |
0.19 |
-8.52 |
0.15 |
9.64 |
| rRNA |
1JBS |
2!D:28!D |
G:C |
WC [cWW][XIX] |
10.61 |
53.2; 55.96 |
2.75 |
-11.64 |
0.02 |
7.27 |
| rRNA |
1JBS |
3!D:27!D |
C:G |
WC [cWW][XIX] |
10.66 |
56.86; 54.27 |
2.59 |
-9.2 |
0.15 |
9.0 |
| rRNA |
1JBS |
4!D:26!D |
U:A |
WC [cWW][XX] |
10.62 |
54.01; 56.33 |
2.32 |
-4.1 |
0.26 |
2.72 |
| rRNA |
1JBS |
5!D:25!D |
C:G |
WC [cWW][XIX] |
10.76 |
55.16; 53.16 |
2.0 |
0.4 |
0.31 |
10.35 |
| rRNA |
1JBS |
6!D:24!D |
C:G |
WC [cWW][XIX] |
10.71 |
55.27; 53.37 |
1.9 |
-1.11 |
0.04 |
1.9 |
| rRNA |
1JBS |
7!D:23!D |
U:C |
sWC [---][-] |
10.46 |
83.02; 25.07 |
57.95 |
11.28 |
0.63 |
18.1 |
| rRNA |
1JBS |
8!D:22!D |
C:C |
S [---][-] |
9.12 |
100.76; 4.77 |
95.99 |
107.25 |
0.09 |
13.15 |
| rRNA |
1JBS |
9!D:21!D |
A:A |
rS* [tHH][-] |
10.99 |
8.39; 14.54 |
6.16 |
-111.84 |
0.92 |
16.55 |
| rRNA |
1JBS |
10!D:20!D |
G:A |
S(bp:N1-O2P)_3 [---][-] |
10.91 |
81.86; 60.84 |
21.01 |
-161.71 |
0.49 |
16.05 |
| rRNA |
1JBS |
10!D:11!D |
G:U |
pS* [cHS][-] |
6.65 |
140.65; 55.3 |
85.36 |
18.5 |
0.85 |
15.23 |
| rRNA |
1JBS |
11!D:20!D |
U:A |
rH_1 [tWH][XXIV] |
9.59 |
27.03; 24.14 |
2.9 |
-165.72 |
0.33 |
8.29 |
| rRNA |
1JBS |
12!D:19!D |
A:G |
S [tSH][XI] |
9.3 |
8.19; 98.08 |
89.89 |
-33.65 |
0.53 |
11.17 |
| rRNA |
1JBS |
13!D:18!D |
C:G |
WC [cWW][XIX] |
10.7 |
55.16; 55.01 |
0.14 |
-9.94 |
0.35 |
15.83 |