Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1JBT
BPC Identified: 26
Ambiguities: 0
| rRNA |
1JBT |
1!C:29!C |
C:G |
WC [cWW][XIX] |
10.78 |
52.0; 55.31 |
3.32 |
-7.46 |
0.08 |
15.11 |
| rRNA |
1JBT |
2!C:28!C |
G:C |
WC [cWW][XIX] |
10.38 |
57.33; 59.45 |
2.12 |
-8.98 |
0.08 |
13.38 |
| rRNA |
1JBT |
3!C:27!C |
C:G |
WC [cWW][XIX] |
10.49 |
54.7; 56.63 |
1.93 |
-2.81 |
0.09 |
6.88 |
| rRNA |
1JBT |
4!C:26!C |
U:A |
WC [cWW][XX] |
10.36 |
57.8; 59.91 |
2.11 |
-1.56 |
0.05 |
6.41 |
| rRNA |
1JBT |
5!C:25!C |
C:G |
WC [cWW][XIX] |
10.3 |
60.74; 54.56 |
6.17 |
-0.55 |
0.1 |
12.53 |
| rRNA |
1JBT |
6!C:24!C |
C:G |
WC [cWW][XIX] |
10.44 |
58.17; 57.2 |
0.97 |
-0.93 |
0.05 |
5.79 |
| rRNA |
1JBT |
7!C:23!C |
U:C |
sWC [---][-] |
10.21 |
83.59; 24.04 |
59.55 |
15.24 |
1.17 |
14.69 |
| rRNA |
1JBT |
8!C:22!C |
C:C |
S [---][-] |
9.06 |
104.59; 6.67 |
97.91 |
63.12 |
0.34 |
11.87 |
| rRNA |
1JBT |
9!C:21!C |
A:A |
rS* [tHH][-] |
11.07 |
10.29; 16.26 |
5.98 |
-118.89 |
0.74 |
14.86 |
| rRNA |
1JBT |
10!C:11!C |
G:U |
pS* [cHS][-] |
6.68 |
142.98; 53.94 |
89.04 |
23.55 |
1.2 |
20.79 |
| rRNA |
1JBT |
11!C:20!C |
U:A |
rH_1 [tWH][XXIV] |
9.8 |
29.24; 19.93 |
9.31 |
-165.77 |
0.33 |
11.12 |
| rRNA |
1JBT |
12!C:19!C |
A:G |
S [tSH][XI] |
9.28 |
10.15; 101.2 |
91.05 |
-32.91 |
0.64 |
13.85 |
| rRNA |
1JBT |
13!C:18!C |
C:G |
WC [cWW][XIX] |
10.68 |
57.26; 53.92 |
3.34 |
-8.98 |
0.43 |
14.33 |
| rRNA |
1JBT |
1!D:29!D |
C:G |
WC [cWW][XIX] |
10.82 |
52.1; 53.37 |
1.28 |
-7.21 |
0.09 |
17.8 |
| rRNA |
1JBT |
2!D:28!D |
G:C |
WC [cWW][XIX] |
10.39 |
56.81; 58.25 |
1.44 |
-7.94 |
0.02 |
12.43 |
| rRNA |
1JBT |
3!D:27!D |
C:G |
WC [cWW][XIX] |
10.45 |
54.28; 55.78 |
1.5 |
-3.57 |
0.18 |
6.79 |
| rRNA |
1JBT |
4!D:26!D |
U:A |
WC [cWW][XX] |
10.39 |
55.94; 59.89 |
3.95 |
-1.22 |
0.03 |
5.88 |
| rRNA |
1JBT |
5!D:25!D |
C:G |
WC [cWW][XIX] |
10.36 |
58.86; 54.95 |
3.91 |
-0.98 |
0.15 |
13.66 |
| rRNA |
1JBT |
6!D:24!D |
C:G |
WC [cWW][XIX] |
10.6 |
55.46; 57.97 |
2.51 |
-0.3 |
0.05 |
5.09 |
| rRNA |
1JBT |
7!D:23!D |
U:C |
sWC [---][-] |
10.23 |
83.44; 24.24 |
59.2 |
16.24 |
1.14 |
12.86 |
| rRNA |
1JBT |
8!D:22!D |
C:C |
S [---][-] |
9.07 |
104.73; 7.59 |
97.14 |
62.29 |
0.43 |
13.16 |
| rRNA |
1JBT |
9!D:21!D |
A:A |
rS* [tHH][-] |
11.05 |
10.12; 16.06 |
5.94 |
-121.67 |
0.68 |
13.33 |
| rRNA |
1JBT |
10!D:11!D |
G:U |
pS* [cHS][-] |
6.69 |
142.48; 53.85 |
88.63 |
20.15 |
1.31 |
22.75 |
| rRNA |
1JBT |
11!D:20!D |
U:A |
rH_1 [tWH][XXIV] |
9.8 |
29.48; 19.81 |
9.67 |
-163.92 |
0.34 |
12.11 |
| rRNA |
1JBT |
12!D:19!D |
A:G |
S [tSH][XI] |
9.3 |
10.02; 101.07 |
91.05 |
-28.85 |
0.57 |
12.41 |
| rRNA |
1JBT |
13!D:18!D |
C:G |
WC [cWW][XIX] |
10.69 |
56.95; 53.74 |
3.21 |
-8.61 |
0.42 |
13.11 |