Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1JGQ BPC Identified: 100 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1JGQ 1!B:72!B G:C WC [cWW][XIX] 10.3 47.86; 57.97 10.11 -4.73 0.09 6.12
tRNA 1JGQ 2!B:71!B C:G WC [cWW][XIX] 10.46 53.67; 57.52 3.85 -4.3 0.23 10.9
tRNA 1JGQ 3!B:70!B G:C WC [cWW][XIX] 10.75 52.99; 53.86 0.87 -7.67 0.28 10.57
tRNA 1JGQ 4!B:69!B G:U Wb [cWW][XXVIII] 10.44 42.75; 68.5 25.75 -7.67 0.26 10.49
tRNA 1JGQ 5!B:68!B A:U WC [cWW][XX] 10.26 57.46; 58.19 0.72 -15.41 0.17 20.83
tRNA 1JGQ 6!B:67!B U:A WC [cWW][XX] 10.15 56.8; 59.58 2.78 -15.51 0.38 22.38
tRNA 1JGQ 7!B:66!B U:A WC [cWW][XX] 10.39 55.49; 53.79 1.7 -1.67 0.09 3.99
tRNA 1JGQ 8!B:21!B U:A fS(sb:O2*-N1) [tSW][-] 8.61 112.09; 48.78 63.31 156.89 0.21 18.43
tRNA 1JGQ 8!B:14!B U:A rH_1 [tWH][XXIV] 9.65 29.68; 19.66 10.02 177.97 0.45 11.94
tRNA 1JGQ 9!B:23!B A:A rS* [tHH][-] 10.9 14.63; 10.67 3.95 130.17 0.39 11.76
tRNA 1JGQ 10!B:45!B G:G pS_1 [cSH][-] 8.61 39.46; 126.91 87.46 -2.81 0.37 25.95
tRNA 1JGQ 10!B:25!B G:C WC [cWW][XIX] 10.46 52.74; 55.67 2.93 -6.73 0.25 10.12
tRNA 1JGQ 11!B:24!B C:G WC [cWW][XIX] 10.36 56.38; 56.13 0.26 -9.33 0.17 19.94
tRNA 1JGQ 12!B:23!B U:A WC [cWW][XX] 10.67 53.51; 52.52 0.99 -8.22 0.11 11.26
tRNA 1JGQ 13!B:22!B C:G WC [cWW][XIX] 10.63 55.25; 54.61 0.64 -4.11 0.07 4.46
tRNA 1JGQ 15!B:48!B G:C rWb [tWW][XXII] 10.43 37.34; 61.01 23.67 -177.13 0.02 1.81
tRNA 1JGQ 18!B:55!B G:U fS_PSU [---][-] 8.62 31.4; 128.63 97.23 -124.3 0.27 15.87
tRNA 1JGQ 19!B:56!B G:C WC [cWW][XIX] 10.45 57.77; 54.51 3.26 -27.13 1.14 35.72
tRNA 1JGQ 22!B:46!B G:G rH_1 [tWH][VII] 11.22 31.18; 29.07 2.11 -176.15 0.19 7.08
tRNA 1JGQ 26!B:44!B G:A WC [cWW][VIII] 12.59 42.26; 49.63 7.37 -25.78 0.11 41.61
tRNA 1JGQ 27!B:43!B C:G WC [cWW][XIX] 10.6 51.89; 52.43 0.54 -17.6 0.25 22.02
tRNA 1JGQ 28!B:42!B C:G WC [cWW][XIX] 10.45 53.62; 55.9 2.28 -11.16 0.24 11.01
tRNA 1JGQ 29!B:41!B A:U WC [cWW][XX] 10.07 61.86; 62.73 0.87 -6.94 0.03 10.03
tRNA 1JGQ 30!B:40!B G:C WC [cWW][XIX] 10.71 57.25; 48.55 8.7 -10.7 0.08 15.06
tRNA 1JGQ 31!B:39!B A:U Wb*_PSU [---][-] 10.92 64.66; 59.56 5.1 -9.5 0.26 15.99
tRNA 1JGQ 32!B:38!B C:A sWb [---][-] 10.87 89.77; 19.48 70.29 -9.88 0.84 5.19
tRNA 1JGQ 47!B:50!B U:U rpS(ps:O1P-O2*) [---][-] 8.83 81.27; 110.28 29.01 155.66 1.16 40.51
tRNA 1JGQ 49!B:65!B C:G WC [cWW][XIX] 10.65 52.41; 55.34 2.92 -2.75 0.01 7.23
tRNA 1JGQ 50!B:64!B U:A WC [cWW][XX] 10.45 54.34; 56.06 1.72 -6.66 0.13 8.22
tRNA 1JGQ 51!B:63!B G:C WC [cWW][XIX] 10.46 56.0; 56.84 0.84 -5.51 0.15 13.35
tRNA 1JGQ 52!B:62!B U:A WC [cWW][XX] 10.55 52.26; 57.53 5.27 -7.88 0.14 7.19
tRNA 1JGQ 53!B:61!B G:C WC [cWW][XIX] 10.55 53.9; 55.77 1.87 -2.96 0.44 12.34
tRNA 1JGQ 54!B:58!B U:A rH_1 [tWH][XXIV] 9.78 31.8; 23.34 8.46 173.33 0.02 2.6
tRNA 1JGQ 55!B:57!B U:G S_PSU(sb:O2*-N7) [---][-] 6.71 92.98; 39.74 53.24 -178.35 2.02 22.61
tRNA 1JGQ 2!C:71!C C:G WC [cWW][XIX] 10.46 53.63; 57.55 3.92 -4.24 0.23 10.89
tRNA 1JGQ 3!C:70!C G:C WC [cWW][XIX] 10.75 53.02; 53.87 0.85 -7.66 0.29 10.59
tRNA 1JGQ 4!C:69!C G:U Wb [cWW][XXVIII] 10.44 42.7; 68.51 25.81 -7.68 0.26 10.4
tRNA 1JGQ 5!C:68!C A:U WC [cWW][XX] 10.25 57.46; 58.23 0.76 -15.36 0.17 20.89
tRNA 1JGQ 6!C:67!C U:A WC [cWW][XX] 10.15 56.83; 59.6 2.78 -15.54 0.38 22.32
tRNA 1JGQ 7!C:66!C U:A WC [cWW][XX] 10.39 55.52; 53.78 1.73 -1.71 0.1 3.99
tRNA 1JGQ 8!C:21!C U:A fS(sb:O2*-N1) [tSW][-] 8.61 112.07; 48.78 63.29 156.76 0.2 18.38
tRNA 1JGQ 8!C:14!C U:A rH_1 [tWH][XXIV] 9.65 29.66; 19.71 9.95 177.79 0.45 11.96
tRNA 1JGQ 9!C:23!C A:A rS* [tHH][-] 10.9 14.62; 10.62 4.0 130.66 0.39 11.78
tRNA 1JGQ 10!C:45!C G:G pS_1 [cSH][-] 8.62 39.45; 126.94 87.49 -2.76 0.37 25.98
tRNA 1JGQ 10!C:25!C G:C WC [cWW][XIX] 10.46 52.74; 55.66 2.92 -6.77 0.25 10.12
tRNA 1JGQ 11!C:24!C C:G WC [cWW][XIX] 10.35 56.36; 56.18 0.18 -9.28 0.18 20.01
tRNA 1JGQ 12!C:23!C U:A WC [cWW][XX] 10.67 53.5; 52.54 0.96 -8.25 0.11 11.29
tRNA 1JGQ 13!C:22!C C:G WC [cWW][XIX] 10.63 55.16; 54.58 0.59 -4.08 0.07 4.49
tRNA 1JGQ 15!C:48!C G:C rWb [tWW][XXII] 10.43 37.39; 60.98 23.59 -177.18 0.03 1.78
tRNA 1JGQ 18!C:55!C G:U fS_PSU [---][-] 8.62 31.4; 128.66 97.25 -124.34 0.27 15.86
tRNA 1JGQ 19!C:56!C G:C WC [cWW][XIX] 10.45 57.75; 54.47 3.27 -27.15 1.14 35.66
tRNA 1JGQ 22!C:46!C G:G rH_1 [tWH][VII] 11.22 31.22; 29.01 2.2 -176.05 0.19 7.11
tRNA 1JGQ 26!C:44!C G:A WC [cWW][VIII] 12.59 42.23; 49.64 7.4 -25.83 0.11 41.61
tRNA 1JGQ 27!C:43!C C:G WC [cWW][XIX] 10.6 51.87; 52.4 0.53 -17.61 0.25 22.02
tRNA 1JGQ 28!C:42!C C:G WC [cWW][XIX] 10.45 53.62; 55.87 2.25 -11.19 0.24 11.02
tRNA 1JGQ 29!C:41!C A:U WC [cWW][XX] 10.07 61.88; 62.74 0.85 -6.97 0.04 10.05
tRNA 1JGQ 30!C:40!C G:C WC [cWW][XIX] 10.71 57.25; 48.53 8.72 -10.66 0.08 15.08
tRNA 1JGQ 31!C:39!C A:U Wb*_PSU [---][-] 10.92 64.69; 59.56 5.13 -9.53 0.26 15.96
tRNA 1JGQ 32!C:38!C C:A sWb [---][-] 10.87 89.77; 19.48 70.29 -9.84 0.84 5.18
tRNA 1JGQ 34!C:18!1 G:U WC [---][-] 11.11 50.32; 49.27 1.04 -12.1 0.13 9.87
tRNA 1JGQ 35!C:17!1 A:U WC [cWW][XX] 10.84 54.02; 52.7 1.33 -6.61 0.07 8.82
tRNA 1JGQ 36!C:16!1 A:U WC [cWW][XX] 10.75 54.29; 53.13 1.15 -4.98 0.06 11.29
tRNA 1JGQ 47!C:50!C U:U rpS(ps:O1P-O2*) [---][-] 8.83 81.24; 110.32 29.08 155.66 1.17 40.51
tRNA 1JGQ 49!C:65!C C:G WC [cWW][XIX] 10.65 52.43; 55.36 2.93 -2.77 0.01 7.22
tRNA 1JGQ 50!C:64!C U:A WC [cWW][XX] 10.45 54.31; 56.08 1.77 -6.65 0.13 8.25
tRNA 1JGQ 51!C:63!C G:C WC [cWW][XIX] 10.46 55.94; 56.89 0.94 -5.45 0.15 13.34
tRNA 1JGQ 52!C:62!C U:A WC [cWW][XX] 10.55 52.28; 57.54 5.26 -7.98 0.14 7.14
tRNA 1JGQ 53!C:61!C G:C WC [cWW][XIX] 10.55 53.91; 55.72 1.81 -3.03 0.44 12.33
tRNA 1JGQ 54!C:58!C U:A rH_1 [tWH][XXIV] 9.78 31.79; 23.31 8.47 173.11 0.01 2.61
tRNA 1JGQ 55!C:57!C U:G S_PSU(sb:O2*-N7) [---][-] 6.71 93.02; 39.67 53.35 -178.29 2.02 22.57
tRNA 1JGQ 1!D:72!D U:A WC [cWW][XX] 10.61 55.18; 53.29 1.89 3.27 0.77 28.4
tRNA 1JGQ 2!D:71!D C:G WC [cWW][XIX] 10.79 54.24; 52.56 1.69 -3.15 0.01 4.63
tRNA 1JGQ 3!D:70!D C:G WC [cWW][XIX] 10.81 50.21; 57.79 7.58 8.3 0.02 10.61
tRNA 1JGQ 4!D:69!D G:C WC [cWW][XIX] 10.48 48.45; 58.34 9.89 -10.57 0.12 11.35
tRNA 1JGQ 5!D:68!D U:G Wb [cWW][XXVIII] 10.42 70.22; 46.46 23.76 6.65 0.45 4.35
tRNA 1JGQ 6!D:67!D G:C WC [cWW][XIX] 10.5 47.57; 56.61 9.04 -13.45 0.0 16.01
tRNA 1JGQ 7!D:66!D A:U WC [cWW][XX] 10.65 54.71; 55.49 0.78 -5.56 0.22 3.89
tRNA 1JGQ 8!D:14!D U:A rH_4SU [---][-] 10.04 32.39; 20.29 12.1 148.87 0.83 11.76
tRNA 1JGQ 9!D:13!D A:A rH [tWH][V] 11.7 30.32; 23.98 6.34 113.4 0.76 28.14
tRNA 1JGQ 10!D:25!D A:U WC [cWW][XX] 10.53 50.85; 55.29 4.44 -1.43 0.17 2.7
tRNA 1JGQ 11!D:24!D C:G WC [cWW][XIX] 10.59 57.85; 52.4 5.46 -14.32 0.23 16.13
tRNA 1JGQ 12!D:23!D A:U WC [cWW][XX] 10.1 65.52; 62.52 2.99 4.82 0.18 5.37
tRNA 1JGQ 13!D:22!D A:A S [tSH][-] 10.01 97.14; 17.86 79.28 -0.63 0.14 1.88
tRNA 1JGQ 14!D:46!D A:A Wb [cWW][-] 12.76 3.59; 61.66 58.06 65.12 0.31 12.71
tRNA 1JGQ 15!D:48!D G:U rWb* [tWW][XXVII] 11.35 9.88; 48.16 38.28 -176.36 0.48 16.26
tRNA 1JGQ 19!D:56!D G:C WC [cWW][XIX] 10.24 57.86; 50.45 7.41 -16.93 1.1 37.46
tRNA 1JGQ 26!D:44!D A:C Wb [cWW][-] 11.25 32.23; 61.85 29.61 -15.69 0.11 21.44
tRNA 1JGQ 27!D:43!D C:G WC [cWW][XIX] 10.44 56.14; 51.81 4.33 -16.31 0.53 26.63
tRNA 1JGQ 28!D:42!D C:G WC [cWW][XIX] 10.56 55.44; 51.6 3.83 -7.45 0.19 12.04
tRNA 1JGQ 29!D:41!D G:C WC [cWW][XIX] 10.71 48.95; 54.97 6.02 -11.92 0.15 15.15
tRNA 1JGQ 30!D:40!D G:C WC [cWW][XIX] 10.44 53.15; 57.83 4.68 -2.77 0.08 10.55
tRNA 1JGQ 31!D:39!D A:U WC [cWW][XX] 10.7 54.18; 53.21 0.96 -1.53 0.16 17.25
tRNA 1JGQ 33!D:37!D U:A S [tSH][-] 10.11 75.84; 3.03 72.81 17.22 0.0 3.84
tRNA 1JGQ 49!D:65!D C:G WC [cWW][XIX] 10.77 51.94; 55.71 3.78 -2.0 0.14 6.65
tRNA 1JGQ 50!D:64!D G:C Wb [---][-] 10.26 48.33; 62.15 13.82 -3.31 0.39 11.37
tRNA 1JGQ 51!D:63!D G:C WC [cWW][XIX] 10.49 46.62; 58.86 12.24 -0.84 0.18 9.92
tRNA 1JGQ 52!D:62!D G:C WC [cWW][XIX] 10.62 60.55; 48.42 12.13 -3.7 0.06 11.27
tRNA 1JGQ 53!D:61!D G:C WC [cWW][XIX] 10.8 53.63; 51.93 1.69 2.17 0.19 7.1
tRNA 1JGQ 54!D:58!D U:A rH_1 [tWH][XXIV] 9.81 32.24; 16.54 15.7 -159.5 0.08 7.92
tRNA 1JGQ 55!D:57!D U:A S_PSU(sb:O2*-N7) [---][-] 6.51 94.54; 42.62 51.92 -178.48 1.29 34.88