Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1K9W BPC Identified: 33 Ambiguities: 3
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
vRNA 1K9W 3!A:21!A U:A Wb* [---][-] 10.79 34.74; 67.26 32.51 -18.6 1.65 4.84
vRNA 1K9W 4!A:20!A G:C WC [cWW][XIX] 9.67 62.86; 65.5 2.64 -18.09 0.67 36.87
vRNA 1K9W 5!A:19!A C:G Wb* [---][-] 11.21 40.64; 60.47 19.84 4.57 0.4 15.29
vRNA 1K9W 6!A:18!A* U:A WC [cWW][XX]; Wb* [---][-] 10.35 53.68; 64.82 11.15 2.1 0.41 8.82
vRNA 1K9W 7!A:17!A G:C WC [cWW][XIX] 10.52 59.35; 58.09 1.26 -4.31 0.03 8.33
vRNA 1K9W 10!A:15!B G:C WC [cWW][XIX] 10.64 51.62; 50.09 1.54 3.02 0.23 22.64
vRNA 1K9W 11!A:14!B U:A WC [cWW][XX] 10.23 54.47; 55.08 0.61 -1.16 0.38 7.98
vRNA 1K9W 12!A:13!B G:C WC [cWW][XIX] 10.6 51.02; 51.0 0.02 -2.06 0.16 13.36
vRNA 1K9W 13!A:12!B C:G WC [cWW][XIX] 10.73 49.7; 51.23 1.53 -6.09 0.26 2.99
vRNA 1K9W 14!A:11!B A:U WC [cWW][XX] 10.26 53.27; 58.03 4.76 -5.41 0.55 14.39
vRNA 1K9W 15!A:10!B C:G WC [cWW][XIX] 10.33 55.28; 56.65 1.37 -5.02 0.36 15.84
vRNA 1K9W 1!B:23!B* U:U Wb_mo [cWW][XVI]; Wb_mo [cWW][XVI] 10.4 31.7; 58.08 26.37 -11.04 0.09 21.99
vRNA 1K9W 2!B:22!B U:A WC [cWW][XX] 10.1 57.91; 49.16 8.75 -11.25 0.03 10.78
vRNA 1K9W 3!B:21!B U:A WC [cWW][XX] 10.53 53.21; 55.11 1.9 -10.94 0.05 10.06
vRNA 1K9W 4!B:20!B G:C WC [cWW][XIX] 10.52 54.57; 57.18 2.61 -2.68 0.14 9.27
vRNA 1K9W 5!B:19!B C:G WC [cWW][XIX] 10.14 60.08; 54.06 6.02 -13.1 0.26 19.23
vRNA 1K9W 6!B:18!B U:A WC [cWW][XX] 10.76 44.38; 52.22 7.84 -12.18 0.57 4.79
vRNA 1K9W 7!B:17!B G:C WC [cWW][XIX] 10.59 52.16; 54.78 2.62 5.54 0.27 8.42
vRNA 1K9W 4!C:20!C G:C Wb [---][-] 9.83 53.11; 77.91 24.8 -9.45 0.12 16.48
vRNA 1K9W 5!C:19!C C:G WC_Mo [cWW][XIX] 10.05 60.79; 71.02 10.22 -24.83 0.76 42.29
vRNA 1K9W 6!C:18!C U:A Wb* [---][-] 11.21 37.67; 58.41 20.74 -8.78 0.25 16.63
vRNA 1K9W 7!C:17!C G:C WC [cWW][XIX] 10.73 52.78; 59.01 6.22 -7.7 0.19 14.98
vRNA 1K9W 10!C:15!D G:C WC [cWW][XIX] 10.98 56.28; 52.82 3.46 6.01 0.17 6.36
vRNA 1K9W 11!C:14!D* U:A WC [cWW][XX]; Wb* [---][-] 10.08 52.08; 62.86 10.78 12.96 0.46 23.03
vRNA 1K9W 13!C:12!D C:G WC [cWW][XIX] 10.82 49.2; 61.63 12.43 -5.28 0.42 7.02
vRNA 1K9W 14!C:11!D A:U WC [cWW][XX] 10.21 54.38; 59.96 5.58 -5.35 0.42 13.0
vRNA 1K9W 15!C:10!D C:G WC [cWW][XIX] 10.99 51.35; 57.81 6.47 -0.97 0.09 4.33
vRNA 1K9W 2!D:22!D U:A WC [cWW][XX] 10.7 54.76; 51.53 3.23 -9.3 0.23 8.98
vRNA 1K9W 3!D:21!D U:A WC [cWW][XX] 10.21 50.54; 58.34 7.8 -6.92 0.08 17.12
vRNA 1K9W 4!D:20!D G:C WC [cWW][XIX] 10.41 50.93; 53.01 2.08 -0.28 0.31 5.34
vRNA 1K9W 5!D:19!D C:G WC [cWW][XIX] 10.45 53.16; 49.0 4.16 -6.39 0.1 9.62
vRNA 1K9W 6!D:18!D U:A WC [cWW][XX] 9.72 67.86; 58.89 8.97 -1.99 0.14 9.36
vRNA 1K9W 7!D:17!D G:C WC [cWW][XIX] 10.61 52.93; 54.18 1.25 -14.21 0.48 18.27