Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1KD3
BPC Identified: 10
Ambiguities: 0
| dsRNA |
1KD3 |
1!A:10!B |
G:C |
WC [cWW][XIX] |
10.64 |
53.85; 55.0 |
1.15 |
-2.03 |
0.14 |
6.99 |
| dsRNA |
1KD3 |
2!A:9!B |
G:C |
WC [cWW][XIX] |
10.52 |
55.64; 54.89 |
0.75 |
-6.2 |
0.48 |
19.24 |
| dsRNA |
1KD3 |
3!A:8!B |
U:G |
Wb [cWW][XXVIII] |
10.41 |
67.58; 38.61 |
28.97 |
-4.59 |
0.19 |
10.72 |
| dsRNA |
1KD3 |
4!A:7!B |
C:A |
S [tSH][-] |
9.6 |
95.31; 4.87 |
90.43 |
-3.81 |
0.02 |
9.9 |
| dsRNA |
1KD3 |
5!A:6!B |
A:C |
rH_1 [rWH][XXV] |
11.21 |
12.15; 21.81 |
9.66 |
-163.59 |
0.11 |
5.83 |
| dsRNA |
1KD3 |
6!A:5!B |
C:A |
rH_1 [rWH][XXV] |
11.21 |
20.73; 12.39 |
8.34 |
-164.78 |
0.17 |
6.25 |
| dsRNA |
1KD3 |
7!A:4!B |
A:C |
S [tSH][-] |
9.58 |
4.39; 95.07 |
90.67 |
5.85 |
0.04 |
11.69 |
| dsRNA |
1KD3 |
8!A:3!B |
G:U |
Wb [cWW][XXVIII] |
10.42 |
38.48; 67.92 |
29.44 |
-2.77 |
0.32 |
11.21 |
| dsRNA |
1KD3 |
9!A:2!B |
C:G |
WC [cWW][XIX] |
10.54 |
55.6; 54.92 |
0.68 |
-6.13 |
0.49 |
17.61 |
| dsRNA |
1KD3 |
10!A:1!B |
C:G |
WC [cWW][XIX] |
10.58 |
56.34; 54.36 |
1.98 |
-2.09 |
0.21 |
7.04 |