Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1KD4
BPC Identified: 10
Ambiguities: 0
| dsRNA |
1KD4 |
1!A:10!B |
G:C |
WC [cWW][XIX] |
10.64 |
53.64; 56.36 |
2.72 |
-7.1 |
0.25 |
14.15 |
| dsRNA |
1KD4 |
2!A:9!B |
G:C |
WC [cWW][XIX] |
10.6 |
53.93; 55.19 |
1.26 |
-15.79 |
0.35 |
19.16 |
| dsRNA |
1KD4 |
3!A:8!B |
U:G |
Wb [cWW][XXVIII] |
10.53 |
65.22; 41.34 |
23.88 |
-12.87 |
0.15 |
10.78 |
| dsRNA |
1KD4 |
4!A:7!B |
C:A |
S [tSH][-] |
10.57 |
99.17; 11.71 |
87.46 |
-13.31 |
0.62 |
7.66 |
| dsRNA |
1KD4 |
5!A:6!B |
A:C |
rH_1 [rWH][XXV] |
11.31 |
8.14; 22.41 |
14.27 |
-172.44 |
0.23 |
12.39 |
| dsRNA |
1KD4 |
6!A:5!B |
C:A |
rH_1 [rWH][XXV] |
11.27 |
22.25; 8.5 |
13.75 |
-179.83 |
0.25 |
13.82 |
| dsRNA |
1KD4 |
7!A:4!B |
A:C |
S [tSH][-] |
10.59 |
10.47; 100.09 |
89.62 |
-24.53 |
0.69 |
7.88 |
| dsRNA |
1KD4 |
8!A:3!B |
G:U |
Wb [cWW][XXVIII] |
10.51 |
41.62; 65.49 |
23.88 |
-13.02 |
0.31 |
10.31 |
| dsRNA |
1KD4 |
9!A:2!B |
C:G |
WC [cWW][XIX] |
10.6 |
55.27; 53.57 |
1.7 |
-15.28 |
0.35 |
18.92 |
| dsRNA |
1KD4 |
10!A:1!B |
C:G |
WC [cWW][XIX] |
10.64 |
56.38; 53.4 |
2.98 |
-6.96 |
0.19 |
12.98 |