Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1KD5
BPC Identified: 10
Ambiguities: 0
| dsRNA |
1KD5 |
1!A:10!B |
G:C |
WC [cWW][XIX] |
10.9 |
53.23; 55.03 |
1.8 |
-1.58 |
0.05 |
10.15 |
| dsRNA |
1KD5 |
2!A:9!B |
G:C |
WC [cWW][XIX] |
10.78 |
55.59; 55.02 |
0.56 |
-6.2 |
0.18 |
15.69 |
| dsRNA |
1KD5 |
3!A:8!B |
U:G |
Wb [cWW][XXVIII] |
10.76 |
66.38; 36.49 |
29.9 |
-2.26 |
0.32 |
12.35 |
| dsRNA |
1KD5 |
4!A:7!B |
C:A |
S [tSH][-] |
9.91 |
95.88; 4.1 |
91.77 |
17.05 |
0.14 |
14.12 |
| dsRNA |
1KD5 |
5!A:6!B |
A:C |
rH_1 [rWH][XXV] |
11.31 |
13.54; 21.28 |
7.75 |
-165.77 |
0.56 |
9.69 |
| dsRNA |
1KD5 |
6!A:5!B |
C:A |
rH_1 [rWH][XXV] |
11.34 |
21.94; 12.79 |
9.14 |
-161.87 |
0.46 |
9.52 |
| dsRNA |
1KD5 |
7!A:4!B |
A:C |
S [tSH][-] |
9.92 |
3.79; 95.7 |
91.91 |
25.13 |
0.18 |
14.59 |
| dsRNA |
1KD5 |
8!A:3!B |
G:U |
Wb [cWW][XXVIII] |
10.77 |
36.78; 65.95 |
29.17 |
-1.33 |
0.35 |
11.48 |
| dsRNA |
1KD5 |
9!A:2!B |
C:G |
WC [cWW][XIX] |
10.75 |
56.47; 56.44 |
0.03 |
-6.54 |
0.38 |
17.66 |
| dsRNA |
1KD5 |
10!A:1!B |
C:G |
WC [cWW][XIX] |
10.9 |
54.2; 53.83 |
0.37 |
-0.79 |
0.15 |
8.06 |