Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1KFO
BPC Identified: 18
Ambiguities: 0
dsRNA |
1KFO |
1!A:18!B |
G:C |
WC [cWW][XIX] |
10.48 |
51.61; 56.19 |
4.58 |
-3.42 |
0.26 |
13.54 |
dsRNA |
1KFO |
2!A:17!B |
A:C |
Wb [cWW][-] |
9.87 |
47.32; 72.46 |
25.14 |
-12.63 |
0.08 |
16.73 |
dsRNA |
1KFO |
3!A:16!B |
A:U |
WC [cWW][XX] |
10.33 |
57.82; 57.31 |
0.51 |
-13.65 |
0.0 |
18.09 |
dsRNA |
1KFO |
4!A:15!B |
U:A |
WC [cWW][XX] |
10.25 |
58.74; 59.31 |
0.57 |
-11.09 |
0.19 |
14.84 |
dsRNA |
1KFO |
5!A:14!B |
G:C |
WC [cWW][XIX] |
10.51 |
54.85; 56.15 |
1.3 |
-6.49 |
0.03 |
10.44 |
dsRNA |
1KFO |
6!A:13!B |
C:G |
WC [cWW][XIX] |
10.55 |
55.51; 54.71 |
0.8 |
-7.59 |
0.06 |
12.69 |
dsRNA |
1KFO |
7!A:12!B |
C:A |
Wb [cWW][-] |
10.23 |
71.27; 43.32 |
27.95 |
-5.67 |
0.06 |
7.79 |
dsRNA |
1KFO |
8!A:11!B |
U:G |
Wb [cWW][XXVIII] |
10.43 |
66.62; 42.82 |
23.8 |
-7.63 |
0.5 |
14.86 |
dsRNA |
1KFO |
9!A:10!B |
G:C |
WC [cWW][XIX] |
10.59 |
54.64; 55.84 |
1.19 |
-1.9 |
0.04 |
6.68 |
dsRNA |
1KFO |
10!A:9!B |
C:G |
WC [cWW][XIX] |
10.59 |
55.84; 54.64 |
1.19 |
-1.9 |
0.04 |
6.68 |
dsRNA |
1KFO |
11!A:8!B |
G:U |
Wb [cWW][XXVIII] |
10.43 |
42.82; 66.62 |
23.8 |
-7.63 |
0.5 |
14.86 |
dsRNA |
1KFO |
12!A:7!B |
A:C |
Wb [cWW][-] |
10.23 |
43.32; 71.27 |
27.95 |
-5.67 |
0.06 |
7.79 |
dsRNA |
1KFO |
13!A:6!B |
G:C |
WC [cWW][XIX] |
10.55 |
54.71; 55.51 |
0.8 |
-7.59 |
0.06 |
12.69 |
dsRNA |
1KFO |
14!A:5!B |
C:G |
WC [cWW][XIX] |
10.51 |
56.15; 54.85 |
1.3 |
-6.49 |
0.03 |
10.44 |
dsRNA |
1KFO |
15!A:4!B |
A:U |
WC [cWW][XX] |
10.25 |
59.31; 58.74 |
0.57 |
-11.09 |
0.19 |
14.84 |
dsRNA |
1KFO |
16!A:3!B |
U:A |
WC [cWW][XX] |
10.33 |
57.31; 57.82 |
0.51 |
-13.65 |
0.0 |
18.09 |
dsRNA |
1KFO |
17!A:2!B |
C:A |
Wb [cWW][-] |
9.87 |
72.46; 47.32 |
25.14 |
-12.63 |
0.08 |
16.73 |
dsRNA |
1KFO |
18!A:1!B |
C:G |
WC [cWW][XIX] |
10.48 |
56.19; 51.61 |
4.58 |
-3.42 |
0.26 |
13.54 |