Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1KUQ
BPC Identified: 26
Ambiguities: 0
| rRNA |
1KUQ |
1!B:57!B |
G:C |
WC [cWW][XIX] |
10.98 |
46.89; 51.77 |
4.88 |
-1.73 |
0.09 |
1.35 |
| rRNA |
1KUQ |
2!B:56!B |
G:U |
Wb [cWW][XXVIII] |
10.06 |
45.04; 68.2 |
23.17 |
-13.24 |
0.22 |
13.97 |
| rRNA |
1KUQ |
3!B:55!B |
G:C |
WC [cWW][XIX] |
10.45 |
52.06; 60.04 |
7.98 |
-5.95 |
0.11 |
9.66 |
| rRNA |
1KUQ |
4!B:54!B |
C:G |
WC [cWW][XIX] |
10.61 |
52.72; 52.57 |
0.14 |
-5.98 |
0.11 |
8.07 |
| rRNA |
1KUQ |
6!B:17!B |
G:A |
pfS_1 [---][-] |
7.94 |
108.18; 77.09 |
31.09 |
76.34 |
0.5 |
65.53 |
| rRNA |
1KUQ |
6!B:15!B |
G:C |
WC [cWW][XIX] |
10.41 |
51.42; 53.95 |
2.53 |
-2.99 |
0.5 |
14.41 |
| rRNA |
1KUQ |
7!B:14!B |
C:G |
WC [cWW][XIX] |
10.07 |
55.85; 61.07 |
5.21 |
-4.44 |
0.1 |
23.28 |
| rRNA |
1KUQ |
8!B:13!B |
C:G |
WC [cWW][XIX] |
10.47 |
55.8; 57.96 |
2.15 |
-2.11 |
0.02 |
8.11 |
| rRNA |
1KUQ |
9!B:12!B |
U:G |
fS_1 [tSW][-] |
9.36 |
98.88; 30.6 |
68.28 |
167.81 |
0.07 |
10.97 |
| rRNA |
1KUQ |
15!B:52!B |
C:A |
rH(bp:N4-O2P)_1 [---][-] |
11.0 |
23.68; 39.07 |
15.39 |
-174.25 |
2.35 |
11.88 |
| rRNA |
1KUQ |
16!B:52!B |
U:A |
rH_1 [tWH][XXIV] |
9.57 |
32.19; 17.99 |
14.2 |
-149.47 |
0.12 |
11.44 |
| rRNA |
1KUQ |
18!B:53!B |
G:C |
WC [cWW][XIX] |
10.87 |
51.39; 51.18 |
0.21 |
0.5 |
0.44 |
3.16 |
| rRNA |
1KUQ |
18!B:51!B |
G:G |
S_1 [tSH][-] |
10.63 |
15.04; 96.24 |
81.2 |
-25.15 |
0.38 |
13.93 |
| rRNA |
1KUQ |
19!B:50!B |
A:U |
WC [cWW][XX] |
10.4 |
54.75; 54.92 |
0.18 |
-6.92 |
0.25 |
11.04 |
| rRNA |
1KUQ |
20!B:49!B |
C:G |
WC [cWW][XIX] |
10.3 |
58.0; 55.99 |
2.01 |
-7.86 |
0.51 |
17.1 |
| rRNA |
1KUQ |
21!B:48!B |
G:C |
WC [cWW][XIX] |
10.33 |
55.19; 55.71 |
0.52 |
-3.02 |
0.12 |
8.4 |
| rRNA |
1KUQ |
22!B:46!B |
G:C |
Wb [---][-] |
10.82 |
41.29; 58.22 |
16.93 |
-23.82 |
0.21 |
24.7 |
| rRNA |
1KUQ |
23!B:45!B |
U:A |
WC [cWW][XX] |
10.09 |
58.52; 58.6 |
0.08 |
-12.65 |
0.17 |
13.44 |
| rRNA |
1KUQ |
24!B:44!B |
G:C |
WC [cWW][XIX] |
10.49 |
52.99; 58.07 |
5.08 |
-0.29 |
0.19 |
6.43 |
| rRNA |
1KUQ |
25!B:43!B |
G:C |
WC [cWW][XIX] |
10.54 |
52.56; 50.23 |
2.33 |
-13.4 |
0.08 |
17.63 |
| rRNA |
1KUQ |
26!B:42!B |
G:U |
Wb [cWW][XXVIII] |
10.2 |
43.54; 66.5 |
22.96 |
-19.02 |
1.07 |
30.68 |
| rRNA |
1KUQ |
27!B:41!B |
A:G |
WC [cWW][VIII] |
12.17 |
54.02; 47.1 |
6.92 |
1.35 |
0.31 |
12.48 |
| rRNA |
1KUQ |
30!B:39!B |
G:U |
Wb [cWW][XXVIII] |
10.22 |
42.75; 67.86 |
25.11 |
-9.57 |
0.58 |
14.5 |
| rRNA |
1KUQ |
31!B:38!B |
G:C |
WC [cWW][XIX] |
10.58 |
58.19; 52.99 |
5.2 |
-5.97 |
0.14 |
7.83 |
| rRNA |
1KUQ |
32!B:37!B |
C:G |
WC [cWW][XIX] |
10.25 |
55.45; 52.72 |
2.72 |
-1.01 |
0.07 |
9.12 |
| rRNA |
1KUQ |
33!B:35!B |
U:C |
pfS*_1 [cWS][-] |
6.75 |
63.74; 110.88 |
47.14 |
41.33 |
0.05 |
50.29 |