Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1KXK
BPC Identified: 30
Ambiguities: 0
Group_II_RNA |
1KXK |
4!A:66!A |
U:A |
rH_1 [tWH][XXIV] |
9.43 |
30.06; 24.57 |
5.49 |
-171.37 |
0.03 |
4.74 |
Group_II_RNA |
1KXK |
5!A:65!A |
A:G |
S [tSH][XI] |
9.81 |
8.55; 97.96 |
89.4 |
-14.36 |
0.04 |
3.35 |
Group_II_RNA |
1KXK |
6!A:64!A |
C:G |
WC [cWW][XIX] |
10.51 |
54.76; 54.49 |
0.27 |
-6.37 |
0.41 |
10.6 |
Group_II_RNA |
1KXK |
7!A:63!A |
C:G |
WC [cWW][XIX] |
10.45 |
54.07; 53.39 |
0.68 |
-6.6 |
0.2 |
8.73 |
Group_II_RNA |
1KXK |
8!A:62!A |
U:G |
Wb [cWW][XXVIII] |
10.13 |
70.51; 40.42 |
30.08 |
-3.06 |
0.07 |
5.72 |
Group_II_RNA |
1KXK |
11!A:61!A |
C:G |
WC [cWW][XIX] |
10.37 |
61.41; 52.65 |
8.76 |
-6.68 |
0.03 |
16.82 |
Group_II_RNA |
1KXK |
12!A:60!A |
G:C |
WC [cWW][XIX] |
10.57 |
59.12; 50.32 |
8.8 |
-3.05 |
0.06 |
8.58 |
Group_II_RNA |
1KXK |
13!A:59!A |
G:C |
WC [cWW][XIX] |
10.67 |
45.22; 52.69 |
7.46 |
-9.97 |
0.38 |
10.12 |
Group_II_RNA |
1KXK |
14!A:58!A |
G:C |
WC [cWW][XIX] |
10.59 |
53.45; 53.55 |
0.1 |
-2.38 |
0.13 |
12.71 |
Group_II_RNA |
1KXK |
15!A:57!A |
C:G |
WC [cWW][XIX] |
10.51 |
55.08; 51.6 |
3.48 |
-7.15 |
0.1 |
7.99 |
Group_II_RNA |
1KXK |
16!A:55!A |
U:A |
rH_1 [tWH][XXIV] |
10.03 |
40.77; 9.42 |
31.34 |
173.75 |
0.23 |
10.83 |
Group_II_RNA |
1KXK |
17!A:18!A |
A:A |
pS [cSH][-] |
6.26 |
163.3; 33.9 |
129.4 |
28.25 |
0.8 |
14.68 |
Group_II_RNA |
1KXK |
19!A:54!A |
G:U |
Wb [cWW][XXVIII] |
9.95 |
42.16; 76.03 |
33.87 |
-18.8 |
0.32 |
18.11 |
Group_II_RNA |
1KXK |
20!A:53!A |
G:C |
WC [cWW][XIX] |
10.73 |
42.65; 49.59 |
6.94 |
-15.19 |
0.06 |
21.51 |
Group_II_RNA |
1KXK |
21!A:52!A |
A:U |
Wb* [---][-] |
10.44 |
60.92; 46.27 |
14.66 |
-18.21 |
0.1 |
19.16 |
Group_II_RNA |
1KXK |
22!A:51!A |
G:U |
Wb [cWW][XXVIII] |
11.1 |
40.86; 60.99 |
20.13 |
-14.77 |
0.55 |
13.86 |
Group_II_RNA |
1KXK |
23!A:50!A |
C:G |
Wb [---][-] |
10.52 |
67.11; 52.26 |
14.84 |
-16.79 |
0.64 |
21.45 |
Group_II_RNA |
1KXK |
24!A:49!A |
C:G |
Wb [---][-] |
10.5 |
61.36; 44.25 |
17.11 |
-21.29 |
0.17 |
25.67 |
Group_II_RNA |
1KXK |
25!A:48!A |
G:C |
WC [cWW][XIX] |
10.8 |
45.78; 50.19 |
4.41 |
-12.2 |
0.65 |
7.79 |
Group_II_RNA |
1KXK |
26!A:47!A |
U:A |
WC [cWW][XX] |
10.62 |
56.19; 58.17 |
1.98 |
-0.55 |
0.18 |
3.79 |
Group_II_RNA |
1KXK |
27!A:46!A |
A:U |
WC [cWW][XX] |
10.54 |
59.39; 54.33 |
5.06 |
-7.13 |
0.37 |
9.0 |
Group_II_RNA |
1KXK |
28!A:45!A |
U:G |
Wb [cWW][XXVIII] |
10.18 |
68.71; 42.38 |
26.33 |
-12.6 |
0.11 |
12.93 |
Group_II_RNA |
1KXK |
29!A:42!A |
G:C |
WC [cWW][XIX] |
10.75 |
54.72; 49.39 |
5.32 |
-0.33 |
0.16 |
4.99 |
Group_II_RNA |
1KXK |
30!A:41!A |
C:G |
WC [cWW][XIX] |
10.52 |
57.09; 52.22 |
4.87 |
-9.03 |
0.06 |
9.66 |
Group_II_RNA |
1KXK |
31!A:40!A |
G:C |
WC [cWW][XIX] |
10.44 |
59.49; 58.69 |
0.8 |
-5.62 |
0.16 |
17.47 |
Group_II_RNA |
1KXK |
32!A:39!A |
A:U |
WC [cWW][XX] |
10.47 |
58.82; 54.13 |
4.69 |
-7.06 |
0.15 |
10.26 |
Group_II_RNA |
1KXK |
33!A:38!A |
U:G |
Wb [cWW][XXVIII] |
10.16 |
69.08; 41.86 |
27.23 |
0.4 |
0.03 |
1.42 |
Group_II_RNA |
1KXK |
34!A:37!A |
G:A |
S [tSH][XI] |
9.21 |
94.08; 9.14 |
84.94 |
-92.56 |
0.4 |
20.97 |
Group_II_RNA |
1KXK |
34!A:36!A |
G:A |
S(sb:O2*-N7) [---][-] |
7.15 |
87.39; 33.94 |
53.44 |
-168.23 |
2.45 |
30.38 |
Group_II_RNA |
1KXK |
64!A:67!A |
G:A |
rpS [cSS][-] |
6.71 |
94.26; 135.36 |
41.1 |
-37.84 |
1.13 |
64.28 |