Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1L3D BPC Identified: 14 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
vRNA 1L3D 3!A:18!A C:G WC [cWW][XIX] 10.45 55.17; 51.91 3.26 -5.74 0.35 13.44
vRNA 1L3D 4!A:20!A G:A rS [tSS][-] 8.08 84.35; 53.64 30.71 157.08 0.77 39.64
vRNA 1L3D 4!A:17!A G:C WC [cWW][XIX] 10.29 54.81; 63.12 8.31 -15.36 0.12 19.39
vRNA 1L3D 5!A:16!A C:G WC [cWW][XIX] 10.54 52.01; 59.06 7.05 -6.48 0.03 14.94
vRNA 1L3D 6!A:15!A G:C WC [cWW][XIX] 10.49 54.35; 49.66 4.69 -2.33 0.35 10.01
vRNA 1L3D 7!A:24!A G:A fS [tSW][X] 9.18 118.61; 10.87 107.74 90.12 0.33 11.12
vRNA 1L3D 7!A:14!A G:C WC [cWW][XIX] 10.65 49.58; 51.23 1.65 -4.81 0.23 9.99
vRNA 1L3D 8!A:12!A C:G rH_1 [tWH][-] 11.05 26.17; 7.24 18.93 164.23 0.27 5.63
vRNA 1L3D 10!A:28!A C:G WC [cWW][XIX] 10.53 51.96; 52.21 0.25 -11.27 0.31 13.38
vRNA 1L3D 11!A:27!A C:G WC [cWW][XIX] 10.57 54.92; 50.29 4.63 -16.88 0.04 18.71
vRNA 1L3D 12!A:26!A G:C WC [cWW][XIX] 10.64 53.69; 60.08 6.38 -8.49 0.16 14.32
vRNA 1L3D 15!A:23!A C:A pfS [cSW][-] 9.96 119.72; 31.93 87.79 -11.98 0.18 7.83
vRNA 1L3D 16!A:21!A G:A S(sb:O2*-N6)_3 [---][-] 9.47 129.96; 19.7 110.26 144.07 1.61 5.44
vRNA 1L3D 17!A:20!A C:A rpS(bs:O2-O2*) [cSS][-] 5.21 113.84; 150.02 36.18 -27.09 1.26 21.82