Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1L9A BPC Identified: 58 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
SRP_RNA 1L9A 112!B:239!B G:C Wb [---][-] 10.89 42.2; 60.88 18.67 -16.15 0.63 19.62
SRP_RNA 1L9A 113!B:238!B A:U WC [cWW][XX] 9.76 64.55; 60.92 3.63 -14.26 0.52 21.5
SRP_RNA 1L9A 114!B:237!B C:G WC [cWW][XIX] 10.76 56.12; 52.6 3.52 -3.62 0.38 11.03
SRP_RNA 1L9A 115!B:236!B A:U WC [cWW][XX] 11.32 50.97; 44.98 5.99 -14.96 0.66 31.63
SRP_RNA 1L9A 116!B:235!B C:G WC [cWW][XIX] 10.72 55.47; 57.78 2.31 -8.65 0.51 18.75
SRP_RNA 1L9A 120!B:230!B G:C WC [cWW][XIX] 10.43 53.02; 45.76 7.26 -26.2 0.42 32.59
SRP_RNA 1L9A 121!B:229!B U:U Wb [cWW][XVI] 9.33 29.36; 70.39 41.02 -12.94 0.19 16.52
SRP_RNA 1L9A 122!B:228!B U:A Wb* [---][-] 10.32 54.4; 69.89 15.49 -18.05 0.96 26.28
SRP_RNA 1L9A 123!B:227!B C:G WC [cWW][XIX] 10.69 49.32; 58.56 9.24 -5.7 0.58 7.44
SRP_RNA 1L9A 124!B:226!B G:U Wb [cWW][XXVIII] 10.88 32.29; 63.17 30.88 -7.33 0.4 11.9
SRP_RNA 1L9A 125!B:225!B G:C WC [cWW][XIX] 10.47 49.94; 54.82 4.88 -7.58 0.37 12.93
SRP_RNA 1L9A 126!B:224!B C:G WC [cWW][XIX] 11.15 51.64; 53.56 1.92 -0.17 0.03 2.33
SRP_RNA 1L9A 127!B:223!B A:U WC [cWW][XX] 10.8 57.83; 54.23 3.61 -8.67 0.41 7.95
SRP_RNA 1L9A 128!B:222!B U:G Wb [cWW][XXVIII] 10.21 68.14; 44.5 23.64 -19.79 0.84 28.2
SRP_RNA 1L9A 129!B:168!B C:G WC [cWW][XIX] 10.87 49.93; 54.51 4.58 -8.33 0.16 6.59
SRP_RNA 1L9A 130!B:167!B A:U WC [cWW][XX] 10.43 50.46; 60.94 10.48 -11.16 0.41 6.92
SRP_RNA 1L9A 131!B:166!B A:U WC [cWW][XX] 10.58 58.8; 57.69 1.1 -5.2 0.88 2.55
SRP_RNA 1L9A 132!B:165!B U:G Wb [cWW][XXVIII] 10.38 62.17; 41.0 21.18 -3.06 0.27 8.82
SRP_RNA 1L9A 132!B:164!B U:G sWb* [---][-] 12.07 30.07; 62.45 32.37 -5.48 0.31 24.82
SRP_RNA 1L9A 133!B:164!B A:G S [tSH][XI] 9.95 1.69; 89.73 88.04 -136.6 0.64 10.9
SRP_RNA 1L9A 134!B:163!B U:A Wb* [---][-] 11.76 35.72; 56.03 20.31 -4.75 0.19 13.76
SRP_RNA 1L9A 135!B:162!B G:C WC [cWW][XIX] 10.74 56.12; 53.14 2.98 -6.73 0.12 7.92
SRP_RNA 1L9A 136!B:161!B G:C WC [cWW][XIX] 10.63 52.01; 60.21 8.2 -7.6 0.4 13.45
SRP_RNA 1L9A 137!B:160!B U:A WC [cWW][XX] 10.71 58.06; 49.39 8.67 -11.73 0.02 10.18
SRP_RNA 1L9A 138!B:159!B G:C WC [cWW][XIX] 10.57 52.42; 55.76 3.35 -7.26 0.08 8.85
SRP_RNA 1L9A 139!B:158!B A:C sWb [---][-] 11.47 25.23; 64.39 39.16 -7.85 0.01 15.4
SRP_RNA 1L9A 140!B:157!B C:A Wb* [cWW][-] 11.49 40.79; 60.54 19.75 -2.68 0.44 11.37
SRP_RNA 1L9A 141!B:156!B C:G WC [cWW][XIX] 10.32 56.73; 53.34 3.39 -4.92 0.41 14.69
SRP_RNA 1L9A 142!B:155!B U:G Wb [cWW][XXVIII] 10.46 66.7; 47.13 19.57 -4.95 0.18 11.74
SRP_RNA 1L9A 143!B:154!B C:G WC [cWW][XIX] 10.38 62.91; 58.04 4.87 9.24 0.33 7.35
SRP_RNA 1L9A 144!B:153!B C:G WC [cWW][XIX] 10.27 56.62; 59.04 2.42 1.34 0.07 8.25
SRP_RNA 1L9A 145!B:152!B C:G WC [cWW][XIX] 10.29 55.09; 61.14 6.05 -5.24 0.33 14.16
SRP_RNA 1L9A 146!B:151!B G:C WC [cWW][XIX] 10.63 57.55; 49.23 8.32 0.1 0.02 22.31
SRP_RNA 1L9A 147!B:150!B G:G S_2_mo [---][-] 11.24 75.3; 26.09 49.22 -177.56 1.12 17.66
SRP_RNA 1L9A 149!B:201!B A:A rWb* [tWW][I] 13.64 30.2; 19.55 10.65 140.1 0.48 15.94
SRP_RNA 1L9A 149!B:197!B A:G pfS(sb:O2*-N3) [---][-] 5.8 97.74; 144.12 46.38 -21.99 1.8 9.4
SRP_RNA 1L9A 150!B:203!B G:G rS(sb:O2*-N3) [---][-] 4.65 88.01; 109.69 21.68 -136.1 0.39 25.11
SRP_RNA 1L9A 150!B:202!B G:C rS [tSS][-] 8.75 75.03; 75.72 0.69 -153.75 0.6 23.0
SRP_RNA 1L9A 150!B:197!B G:G rpS [cSS][-] 4.6 128.34; 103.69 24.66 110.03 0.25 24.34
SRP_RNA 1L9A 172!B:224!B A:G rpS [cSS][-] 5.16 130.16; 121.54 8.62 -14.02 0.56 24.85
SRP_RNA 1L9A 177!B:220!B G:C WC [cWW][XIX] 10.74 49.16; 53.29 4.13 -5.01 0.09 10.75
SRP_RNA 1L9A 178!B:219!B G:C WC [cWW][XIX] 10.16 65.78; 57.35 8.43 -8.14 0.34 20.44
SRP_RNA 1L9A 179!B:218!B G:U Wb [cWW][XXVIII] 10.38 43.0; 62.55 19.55 -6.81 0.41 17.33
SRP_RNA 1L9A 180!B:217!B G:C WC [cWW][XIX] 10.76 55.78; 50.91 4.87 -6.52 0.38 12.35
SRP_RNA 1L9A 181!B:216!B U:A WC [cWW][XX] 10.73 51.55; 56.76 5.21 -9.99 0.25 10.7
SRP_RNA 1L9A 187!B:212!B G:C WC [cWW][XIX] 10.69 54.32; 58.08 3.76 -3.86 0.1 6.19
SRP_RNA 1L9A 188!B:211!B G:U H_2 [---][-] 9.37 23.75; 76.7 52.96 -0.14 0.09 14.88
SRP_RNA 1L9A 189!B:210!B C:G WC [cWW][XIX] 10.48 60.91; 54.48 6.43 -14.94 0.35 23.2
SRP_RNA 1L9A 190!B:209!B C:G WC [cWW][XIX] 10.31 52.56; 61.33 8.77 -11.81 0.01 13.19
SRP_RNA 1L9A 191!B:208!B C:A sWb [---][-] 11.29 82.66; 27.08 55.58 -5.6 0.17 19.61
SRP_RNA 1L9A 192!B:207!B A:C rH_1 [rWH][XXV] 10.29 7.7; 31.62 23.92 -147.24 0.41 15.86
SRP_RNA 1L9A 193!B:206!B G:G Wb [---][-] 13.11 18.42; 50.47 32.05 -0.56 0.03 7.5
SRP_RNA 1L9A 194!B:205!B G:A WC [cWW][VIII] 12.23 49.23; 49.22 0.01 -2.88 0.15 13.73
SRP_RNA 1L9A 195!B:204!B U:G Wb [cWW][XXVIII] 10.18 65.76; 42.7 23.06 -0.56 0.59 14.67
SRP_RNA 1L9A 196!B:203!B C:G WC [cWW][XIX] 10.67 57.03; 58.35 1.33 -0.26 0.17 6.29
SRP_RNA 1L9A 197!B:202!B G:C WC [cWW][XIX] 10.48 57.0; 53.15 3.85 6.04 0.17 3.46
SRP_RNA 1L9A 198!B:201!B G:A S [tSH][XI] 8.96 100.25; 20.6 79.66 -95.12 1.13 24.56
SRP_RNA 1L9A 198!B:200!B G:A S(sb:O2*-N7) [---][-] 7.39 93.24; 32.5 60.73 -166.33 1.98 31.79