Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1LC4
BPC Identified: 18
Ambiguities: 0
rRNA |
1LC4 |
3!A:46!B |
G:C |
WC [cWW][XIX] |
10.39 |
52.92; 59.12 |
6.21 |
-1.01 |
0.09 |
4.05 |
rRNA |
1LC4 |
4!A:45!B |
C:G |
WC [cWW][XIX] |
10.75 |
54.28; 53.09 |
1.19 |
-9.11 |
0.1 |
14.53 |
rRNA |
1LC4 |
5!A:44!B |
G:C |
WC [cWW][XIX] |
10.39 |
52.18; 58.52 |
6.34 |
-3.04 |
0.02 |
5.32 |
rRNA |
1LC4 |
6!A:43!B |
U:U |
Wb_mo [cWW][XVI] |
10.62 |
29.49; 57.37 |
27.88 |
7.46 |
0.08 |
14.01 |
rRNA |
1LC4 |
7!A:42!B |
C:G |
WC [cWW][XIX] |
10.32 |
56.5; 55.15 |
1.35 |
4.82 |
0.16 |
1.69 |
rRNA |
1LC4 |
9!A:39!B |
C:G |
WC [cWW][XIX] |
10.62 |
54.73; 55.15 |
0.41 |
-14.44 |
0.32 |
24.45 |
rRNA |
1LC4 |
10!A:38!B |
A:U |
WC [cWW][XX] |
10.52 |
54.59; 54.48 |
0.1 |
-13.49 |
0.19 |
19.21 |
rRNA |
1LC4 |
11!A:37!B |
C:G |
WC [cWW][XIX] |
10.35 |
55.19; 52.86 |
2.33 |
-13.01 |
0.32 |
19.27 |
rRNA |
1LC4 |
12!A:36!B |
C:G |
WC [cWW][XIX] |
10.5 |
53.92; 55.68 |
1.77 |
-10.06 |
0.27 |
7.99 |
rRNA |
1LC4 |
13!A:35!B |
G:C |
WC [cWW][XIX] |
10.75 |
51.79; 54.67 |
2.88 |
-8.85 |
0.31 |
14.1 |
rRNA |
1LC4 |
14!A:34!B |
G:C |
WC [cWW][XIX] |
10.74 |
55.62; 53.97 |
1.64 |
-12.74 |
0.07 |
18.0 |
rRNA |
1LC4 |
15!A:33!B |
U:A |
WC [cWW][XX] |
10.45 |
57.78; 55.15 |
2.63 |
-12.98 |
0.31 |
14.21 |
rRNA |
1LC4 |
16!A:32!B |
G:C |
WC [cWW][XIX] |
10.36 |
53.41; 57.32 |
3.91 |
-12.25 |
0.26 |
22.1 |
rRNA |
1LC4 |
19!A:30!B |
G:C |
WC [cWW][XIX] |
10.57 |
50.49; 52.6 |
2.11 |
5.04 |
0.11 |
7.27 |
rRNA |
1LC4 |
20!A:29!B |
U:U |
Wb_mo [cWW][XVI] |
10.1 |
53.14; 30.24 |
22.9 |
0.38 |
0.02 |
7.17 |
rRNA |
1LC4 |
21!A:28!B |
C:G |
WC [cWW][XIX] |
10.25 |
56.91; 52.9 |
4.01 |
-1.29 |
0.02 |
1.21 |
rRNA |
1LC4 |
22!A:27!B |
G:C |
WC [cWW][XIX] |
10.39 |
58.7; 52.65 |
6.05 |
-5.02 |
0.07 |
7.62 |
rRNA |
1LC4 |
23!A:26!B |
C:G |
WC [cWW][XIX] |
10.23 |
58.34; 51.2 |
7.14 |
-2.81 |
0.13 |
4.17 |