Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1LNG
BPC Identified: 50
Ambiguities: 0
| SRP_RNA |
1LNG |
142!B:236!B |
G:C |
WC [cWW][XIX] |
11.04 |
53.52; 49.82 |
3.7 |
-0.89 |
0.13 |
7.47 |
| SRP_RNA |
1LNG |
143!B:235!B |
G:U |
WC [---][-] |
10.83 |
44.86; 48.01 |
3.15 |
-8.04 |
0.04 |
10.98 |
| SRP_RNA |
1LNG |
144!B:234!B |
C:G |
WC [cWW][XIX] |
11.08 |
49.07; 47.61 |
1.45 |
1.63 |
0.25 |
2.5 |
| SRP_RNA |
1LNG |
145!B:233!B |
G:C |
WC [cWW][XIX] |
11.79 |
51.88; 42.19 |
9.69 |
-4.25 |
0.37 |
5.59 |
| SRP_RNA |
1LNG |
145!B:185!B |
G:U |
fS*_2 [---][-] |
11.67 |
87.23; 14.57 |
72.66 |
-142.97 |
1.12 |
32.01 |
| SRP_RNA |
1LNG |
147!B:183!B |
U:U |
rWb* [tWW][XII] |
11.8 |
27.63; 31.2 |
3.57 |
-21.24 |
0.05 |
19.05 |
| SRP_RNA |
1LNG |
148!B:182!B |
G:C |
WC [cWW][XIX] |
10.75 |
55.51; 58.02 |
2.51 |
-7.97 |
0.41 |
9.7 |
| SRP_RNA |
1LNG |
149!B:181!B |
G:C |
WC [cWW][XIX] |
10.54 |
58.48; 48.18 |
10.31 |
-1.57 |
0.23 |
9.48 |
| SRP_RNA |
1LNG |
150!B:180!B |
G:C |
WC [cWW][XIX] |
10.85 |
51.99; 43.6 |
8.38 |
2.91 |
0.18 |
1.69 |
| SRP_RNA |
1LNG |
151!B:179!B |
G:C |
WC [cWW][XIX] |
10.91 |
53.18; 44.53 |
8.65 |
-3.77 |
0.1 |
3.05 |
| SRP_RNA |
1LNG |
152!B:178!B |
G:C |
WC [cWW][XIX] |
10.6 |
53.43; 52.15 |
1.28 |
-3.07 |
0.1 |
6.11 |
| SRP_RNA |
1LNG |
154!B:175!B |
G:U |
Wb [cWW][XXVIII] |
10.75 |
42.98; 54.95 |
11.97 |
-9.02 |
0.14 |
14.19 |
| SRP_RNA |
1LNG |
155!B:174!B |
C:G |
WC [cWW][XIX] |
10.67 |
52.33; 55.42 |
3.09 |
-14.48 |
0.48 |
22.2 |
| SRP_RNA |
1LNG |
156!B:173!B |
A:U |
WC [cWW][XX] |
10.34 |
55.34; 55.76 |
0.42 |
-10.45 |
0.04 |
10.48 |
| SRP_RNA |
1LNG |
157!B:172!B |
U:A |
WC [cWW][XX] |
10.49 |
53.62; 53.09 |
0.53 |
-9.12 |
0.03 |
10.75 |
| SRP_RNA |
1LNG |
158!B:171!B |
C:G |
WC [cWW][XIX] |
10.62 |
54.15; 52.92 |
1.23 |
-10.74 |
0.14 |
10.77 |
| SRP_RNA |
1LNG |
159!B:170!B |
U:A |
WC [cWW][XX] |
10.57 |
57.11; 51.11 |
6.0 |
-2.28 |
0.4 |
9.77 |
| SRP_RNA |
1LNG |
160!B:169!B |
C:G |
WC [cWW][XIX] |
10.57 |
55.22; 56.58 |
1.36 |
-4.06 |
0.22 |
12.26 |
| SRP_RNA |
1LNG |
161!B:168!B |
C:G |
WC [cWW][XIX] |
10.77 |
54.67; 54.15 |
0.53 |
-2.96 |
0.05 |
8.15 |
| SRP_RNA |
1LNG |
162!B:167!B |
U:G |
Wb [cWW][XXVIII] |
10.33 |
66.82; 39.28 |
27.54 |
0.84 |
0.11 |
3.5 |
| SRP_RNA |
1LNG |
163!B:166!B |
G:G |
S_2_mo [---][-] |
10.99 |
71.37; 27.5 |
43.87 |
-179.93 |
0.52 |
9.76 |
| SRP_RNA |
1LNG |
165!B:212!B |
A:A |
rWb* [tWW][I] |
13.79 |
26.46; 25.49 |
0.97 |
162.25 |
0.2 |
14.34 |
| SRP_RNA |
1LNG |
165!B:208!B |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.91 |
94.15; 138.9 |
44.76 |
-16.22 |
1.37 |
10.62 |
| SRP_RNA |
1LNG |
166!B:214!B |
G:G |
rS(sb:O2*-N3) [---][-] |
5.01 |
92.44; 111.78 |
19.34 |
-145.83 |
1.18 |
22.59 |
| SRP_RNA |
1LNG |
166!B:213!B |
G:G |
rS [tSS][IV] |
8.42 |
73.53; 73.85 |
0.32 |
-157.73 |
0.38 |
19.0 |
| SRP_RNA |
1LNG |
176!B:224!B |
A:U |
rpS(sb:O2*-N3) [cSS][-] |
6.68 |
81.25; 147.61 |
66.36 |
-40.64 |
0.21 |
28.93 |
| SRP_RNA |
1LNG |
177!B:223!B |
A:G |
rpS [cSS][-] |
6.41 |
122.29; 114.53 |
7.77 |
-33.75 |
0.2 |
32.55 |
| SRP_RNA |
1LNG |
177!B:198!B |
A:C |
fS(sb:O2*-N1)_1 [tSS][-] |
8.87 |
47.52; 96.53 |
49.02 |
147.83 |
1.09 |
42.21 |
| SRP_RNA |
1LNG |
187!B:231!B |
C:G |
WC [cWW][XIX] |
10.57 |
56.14; 57.62 |
1.48 |
-5.47 |
0.65 |
2.54 |
| SRP_RNA |
1LNG |
188!B:230!B |
C:G |
WC [cWW][XIX] |
11.45 |
46.71; 42.95 |
3.75 |
-2.83 |
0.23 |
6.86 |
| SRP_RNA |
1LNG |
189!B:229!B |
U:A |
WC [cWW][XX] |
10.15 |
66.15; 51.81 |
14.34 |
-13.67 |
0.17 |
17.78 |
| SRP_RNA |
1LNG |
190!B:228!B |
G:C |
WC [cWW][XIX] |
11.23 |
42.49; 44.89 |
2.4 |
-1.11 |
0.19 |
5.72 |
| SRP_RNA |
1LNG |
191!B:227!B |
C:G |
WC [cWW][XIX] |
11.18 |
58.17; 51.13 |
7.04 |
-4.93 |
0.15 |
7.59 |
| SRP_RNA |
1LNG |
192!B:226!B |
C:G |
WC [cWW][XIX] |
10.68 |
49.12; 57.19 |
8.07 |
-9.18 |
0.16 |
12.05 |
| SRP_RNA |
1LNG |
193!B:225!B |
G:A |
S [tSH][XI] |
9.49 |
102.69; 7.49 |
95.2 |
7.96 |
0.34 |
12.03 |
| SRP_RNA |
1LNG |
194!B:224!B |
A:U |
rH_1 [tWH][XXIV] |
9.63 |
16.9; 24.31 |
7.41 |
173.02 |
0.02 |
4.09 |
| SRP_RNA |
1LNG |
198!B:223!B |
C:G |
WC [cWW][XIX] |
10.21 |
58.1; 55.55 |
2.55 |
-9.16 |
0.1 |
11.09 |
| SRP_RNA |
1LNG |
199!B:222!B |
C:G |
WC [cWW][XIX] |
10.68 |
52.8; 53.37 |
0.57 |
-4.84 |
0.21 |
12.12 |
| SRP_RNA |
1LNG |
200!B:221!B |
G:C |
WC [cWW][XIX] |
10.95 |
52.07; 54.43 |
2.35 |
-7.25 |
0.12 |
12.52 |
| SRP_RNA |
1LNG |
201!B:220!B |
C:A |
sWb [---][-] |
11.12 |
80.18; 22.81 |
57.37 |
-6.75 |
0.03 |
17.98 |
| SRP_RNA |
1LNG |
202!B:219!B |
C:A |
S [tSH][-] |
9.34 |
90.31; 4.08 |
86.23 |
-109.76 |
0.14 |
14.59 |
| SRP_RNA |
1LNG |
203!B:218!B |
A:C |
rH_1 [rWH][XXV] |
11.07 |
8.26; 22.21 |
13.95 |
-150.91 |
0.1 |
8.7 |
| SRP_RNA |
1LNG |
203!B:217!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
11.88 |
38.19; 63.87 |
25.68 |
162.32 |
2.43 |
5.25 |
| SRP_RNA |
1LNG |
204!B:217!B |
G:G |
S_1 [tSH][-] |
11.73 |
9.14; 84.01 |
74.87 |
-1.02 |
0.12 |
11.54 |
| SRP_RNA |
1LNG |
205!B:216!B |
G:A |
WC [cWW][VIII] |
12.69 |
40.8; 47.78 |
6.98 |
-4.63 |
0.03 |
13.57 |
| SRP_RNA |
1LNG |
206!B:215!B |
C:G |
WC [cWW][XIX] |
10.81 |
52.09; 48.77 |
3.32 |
-9.67 |
0.6 |
20.0 |
| SRP_RNA |
1LNG |
207!B:214!B |
C:G |
WC [cWW][XIX] |
10.75 |
51.88; 54.32 |
2.44 |
-7.97 |
0.08 |
9.72 |
| SRP_RNA |
1LNG |
208!B:213!B |
C:G |
WC [cWW][XIX] |
10.71 |
56.6; 48.45 |
8.15 |
9.04 |
0.37 |
13.21 |
| SRP_RNA |
1LNG |
209!B:212!B |
G:A |
S [tSH][XI] |
8.98 |
100.83; 11.83 |
89.0 |
-76.5 |
0.3 |
23.46 |
| SRP_RNA |
1LNG |
209!B:211!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.59 |
89.37; 29.86 |
59.51 |
-172.93 |
2.67 |
32.11 |