Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1LNT
BPC Identified: 13
Ambiguities: 0
| SRP_RNA |
1LNT |
1!A:24!B |
G:C |
WC [cWW][XIX] |
10.59 |
53.37; 57.61 |
4.24 |
-11.99 |
0.18 |
11.8 |
| SRP_RNA |
1LNT |
2!A:23!B |
C:G |
WC [cWW][XIX] |
10.58 |
57.06; 54.82 |
2.24 |
-13.63 |
0.01 |
17.68 |
| SRP_RNA |
1LNT |
3!A:22!B |
G:C |
WC [cWW][XIX] |
10.67 |
54.01; 54.7 |
0.69 |
-11.4 |
0.16 |
18.7 |
| SRP_RNA |
1LNT |
4!A:21!B |
U:G |
Wb [cWW][XXVIII] |
10.73 |
64.89; 35.79 |
29.1 |
-6.0 |
0.16 |
10.86 |
| SRP_RNA |
1LNT |
5!A:20!B |
C:A |
S [tSH][-] |
9.61 |
92.03; 9.22 |
82.81 |
-72.47 |
0.5 |
12.32 |
| SRP_RNA |
1LNT |
6!A:19!B |
A:C |
rH_1 [rWH][XXV] |
11.08 |
6.43; 26.3 |
19.87 |
-178.79 |
0.27 |
11.03 |
| SRP_RNA |
1LNT |
6!A:18!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.15 |
37.81; 61.9 |
24.09 |
164.14 |
2.04 |
10.35 |
| SRP_RNA |
1LNT |
7!A:18!B |
G:G |
S_1 [tSH][-] |
11.71 |
7.98; 83.03 |
75.04 |
-9.8 |
0.24 |
10.1 |
| SRP_RNA |
1LNT |
8!A:17!B |
G:A |
WC [cWW][VIII] |
12.66 |
47.14; 49.44 |
2.3 |
-3.17 |
0.06 |
15.85 |
| SRP_RNA |
1LNT |
9!A:16!B |
U:A |
WC [cWW][XX] |
10.92 |
51.85; 51.32 |
0.53 |
-4.85 |
0.4 |
12.01 |
| SRP_RNA |
1LNT |
10!A:15!B |
C:G |
WC [cWW][XIX] |
10.49 |
56.69; 55.47 |
1.22 |
-6.64 |
0.44 |
13.05 |
| SRP_RNA |
1LNT |
11!A:14!B |
C:G |
WC [cWW][XIX] |
10.53 |
56.0; 54.97 |
1.03 |
-10.22 |
0.08 |
11.58 |
| SRP_RNA |
1LNT |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.64 |
56.05; 54.4 |
1.65 |
-7.81 |
0.02 |
8.98 |