Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1M5K BPC Identified: 104 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 1M5K 1!A:91!B G:C WC [cWW][XIX] 10.84 50.86; 52.27 1.41 -12.32 0.01 16.04
HP_ribozyme 1M5K 2!A:90!B G:C WC [cWW][XIX] 10.83 50.51; 52.45 1.94 -16.74 0.16 18.58
HP_ribozyme 1M5K 3!A:89!B C:G WC [cWW][XIX] 10.5 56.82; 57.51 0.69 -6.5 0.05 21.17
HP_ribozyme 1M5K 4!A:88!B C:G WC [cWW][XIX] 10.73 54.3; 54.99 0.69 7.31 0.33 7.27
HP_ribozyme 1M5K 5!A:87!B A:U WC [cWW][XX] 10.49 55.38; 56.54 1.16 -2.44 0.37 14.12
HP_ribozyme 1M5K 6!A:86!B C:G WC [cWW][XIX] 10.35 59.54; 56.5 3.04 -7.77 0.57 32.24
HP_ribozyme 1M5K 7!A:85!B C:G WC [cWW][XIX] 10.81 53.69; 52.37 1.32 -0.99 0.42 15.33
HP_ribozyme 1M5K 8!A:14!B U:A WC [cWW][XX] 10.51 60.8; 59.84 0.96 -12.52 0.72 21.03
HP_ribozyme 1M5K 9!A:13!B G:C WC [cWW][XIX] 10.37 59.04; 60.11 1.08 -8.93 0.09 14.67
HP_ribozyme 1M5K 10!A:12!B A:U WC [cWW][XX] 10.55 57.57; 55.14 2.43 -7.23 0.12 6.57
HP_ribozyme 1M5K 11!A:11!B C:G WC [cWW][XIX] 10.17 64.79; 54.71 10.08 -2.83 0.4 10.25
HP_ribozyme 1M5K 12!A:9!B A:A S [tSH][-] 9.63 94.15; 7.5 86.65 -93.42 0.07 16.15
HP_ribozyme 1M5K 13!A:25!B G:C WC [cWW][XIX] 10.67 49.78; 51.53 1.76 -19.42 1.29 36.24
HP_ribozyme 1M5K 14!A:8!B U:G S*_1 [tHS][-] 11.36 17.08; 93.62 76.54 32.44 0.45 24.01
HP_ribozyme 1M5K 15!A:7!B C:A Wb* [cWW][-] 10.99 46.13; 67.38 21.25 0.79 0.07 25.67
HP_ribozyme 1M5K 16!A:6!B C:G WC [cWW][XIX] 10.83 51.52; 55.72 4.2 1.5 0.02 12.67
HP_ribozyme 1M5K 17!A:5!B U:A WC [cWW][XX] 10.43 57.29; 61.14 3.85 -5.21 0.5 14.43
HP_ribozyme 1M5K 18!A:4!B C:G WC [cWW][XIX] 10.33 60.56; 56.57 3.99 -6.91 0.04 16.64
HP_ribozyme 1M5K 19!A:3!B U:A WC [cWW][XX] 10.34 57.11; 55.73 1.38 -7.93 0.03 12.27
HP_ribozyme 1M5K 20!A:2!B C:G WC [cWW][XIX] 10.52 55.16; 53.17 2.0 -10.8 0.02 16.16
HP_ribozyme 1M5K 21!A:1!B C:G WC [cWW][XIX] 10.94 51.77; 45.45 6.33 -6.47 0.73 8.39
HP_ribozyme 1M5K 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.38 90.56; 147.04 56.48 -76.81 0.39 40.93
HP_ribozyme 1M5K 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.76 150.1; 89.73 60.37 -64.69 1.23 44.67
HP_ribozyme 1M5K 15!B:68!B A:U WC [cWW][XX] 10.33 48.32; 59.61 11.29 -5.2 0.13 9.04
HP_ribozyme 1M5K 16!B:67!B C:G WC [cWW][XIX] 10.56 56.32; 56.11 0.21 -7.91 0.16 9.89
HP_ribozyme 1M5K 17!B:66!B C:G WC [cWW][XIX] 10.54 57.48; 54.64 2.85 -5.43 0.23 17.29
HP_ribozyme 1M5K 18!B:65!B A:U WC [cWW][XX] 10.89 58.84; 58.58 0.26 -5.81 0.04 8.96
HP_ribozyme 1M5K 19!B:64!B G:C WC [cWW][XIX] 10.48 49.41; 57.48 8.06 -0.95 0.15 3.43
HP_ribozyme 1M5K 20!B:63!B A:C Wb* [cWW][-] 11.11 69.25; 39.0 30.25 4.18 0.11 21.95
HP_ribozyme 1M5K 21!B:62!B G:A S [tSH][XI] 9.31 102.07; 2.23 99.84 69.66 0.15 10.26
HP_ribozyme 1M5K 22!B:60!B A:U rH_1 [tWH][XXIV] 9.44 27.68; 25.51 2.17 168.74 0.06 3.09
HP_ribozyme 1M5K 23!B:61!B A:U WC [cWW][XX] 10.02 48.73; 59.17 10.44 32.24 0.94 73.78
HP_ribozyme 1M5K 23!B:59!B A:A rH [tWH][V] 12.29 14.7; 21.98 7.28 172.8 0.25 19.17
HP_ribozyme 1M5K 24!B:57!B A:A rpS* [---][-] 11.9 4.23; 51.44 47.2 53.14 0.09 16.85
HP_ribozyme 1M5K 26!B:55!B A:G WC [cWW][VIII] 12.44 48.5; 50.78 2.28 -7.52 0.04 25.71
HP_ribozyme 1M5K 27!B:54!B C:G WC [cWW][XIX] 10.68 54.69; 54.56 0.13 -11.83 0.51 26.59
HP_ribozyme 1M5K 28!B:53!B A:U WC [cWW][XX] 10.35 57.87; 57.22 0.65 -9.08 0.07 14.55
HP_ribozyme 1M5K 29!B:52!B C:G WC [cWW][XIX] 10.55 54.96; 57.57 2.61 -7.54 0.19 22.61
HP_ribozyme 1M5K 30!B:51!B C:G WC [cWW][XIX] 10.57 54.58; 57.89 3.31 -3.4 0.08 8.25
HP_ribozyme 1M5K 31!B:50!B A:U WC [cWW][XX] 10.59 53.77; 56.85 3.08 -5.97 0.47 16.6
HP_ribozyme 1M5K 32!B:49!B A:U WC [cWW][XX] 10.87 53.92; 55.35 1.44 -9.46 0.33 20.33
HP_ribozyme 1M5K 33!B:48!B C:G WC [cWW][XIX] 10.73 48.43; 54.87 6.43 -8.13 0.32 24.93
HP_ribozyme 1M5K 34!B:47!B C:G WC [cWW][XIX] 10.66 58.39; 51.93 6.46 -5.39 0.11 11.9
HP_ribozyme 1M5K 35!B:46!B C:G WC [cWW][XIX] 10.73 56.19; 53.07 3.12 -1.14 0.1 11.16
HP_ribozyme 1M5K 69!B:84!B A:U WC [cWW][XX] 10.61 52.87; 54.11 1.24 -19.79 0.63 17.29
HP_ribozyme 1M5K 70!B:83!B C:G WC [cWW][XIX] 10.81 41.14; 56.32 15.17 -13.76 0.47 25.74
HP_ribozyme 1M5K 71!B:82!B G:C WC [cWW][XIX] 10.6 59.25; 52.84 6.42 -6.99 0.06 22.06
HP_ribozyme 1M5K 72!B:81!B G:U WC [---][-] 10.33 51.15; 56.63 5.48 -10.66 0.53 25.58
HP_ribozyme 1M5K 73!B:80!B G:U H_2 [---][-] 10.41 24.74; 71.57 46.82 12.74 0.61 30.7
HP_ribozyme 1M5K 74!B:79!B G:C Wb [---][-] 10.14 51.74; 69.25 17.51 15.06 0.22 13.8
HP_ribozyme 1M5K 75!B:78!B G:A S [tSH][XI] 9.0 94.11; 11.44 82.67 -92.24 0.21 21.83
HP_ribozyme 1M5K 75!B:77!B G:A S(sb:O2*-N7) [---][-] 7.37 88.56; 25.4 63.16 -166.35 1.64 35.18
HP_ribozyme 1M5K 1!D:91!E G:C WC [cWW][XIX] 10.71 51.24; 52.36 1.12 -20.33 0.44 19.95
HP_ribozyme 1M5K 2!D:90!E G:C WC [cWW][XIX] 10.86 51.8; 51.47 0.33 -15.08 0.12 19.18
HP_ribozyme 1M5K 3!D:89!E C:G WC [cWW][XIX] 10.53 57.65; 55.2 2.45 -2.86 0.48 9.93
HP_ribozyme 1M5K 4!D:88!E C:G WC [cWW][XIX] 10.59 56.63; 54.68 1.96 1.02 0.37 10.7
HP_ribozyme 1M5K 5!D:87!E A:U WC [cWW][XX] 10.78 53.04; 52.74 0.29 -7.03 0.3 15.05
HP_ribozyme 1M5K 6!D:86!E C:G WC [cWW][XIX] 10.92 51.16; 49.72 1.44 -11.61 0.54 21.8
HP_ribozyme 1M5K 7!D:85!E C:G WC [cWW][XIX] 10.71 53.13; 54.8 1.67 -14.5 0.0 18.3
HP_ribozyme 1M5K 8!D:14!E* U:A WC [cWW][XX]; WC [cWW][XX] 10.99 62.77; 54.51 8.26 -13.61 0.58 26.23
HP_ribozyme 1M5K 9!D:13!E G:C WC [cWW][XIX] 10.35 50.22; 57.61 7.4 -11.9 0.1 11.54
HP_ribozyme 1M5K 10!D:12!E A:U WC [cWW][XX] 10.6 54.03; 51.34 2.7 -3.71 0.02 4.89
HP_ribozyme 1M5K 11!D:11!E C:G WC [cWW][XIX] 10.43 59.46; 55.67 3.79 0.01 0.43 9.7
HP_ribozyme 1M5K 12!D:9!E A:A S [tSH][-] 9.93 87.98; 8.8 79.18 -78.54 0.11 18.37
HP_ribozyme 1M5K 13!D:25!E G:C WC [cWW][XIX] 10.62 52.46; 53.82 1.37 -18.29 1.56 38.77
HP_ribozyme 1M5K 14!D:8!E U:G S*_1 [tHS][-] 11.08 17.74; 98.52 80.77 26.7 0.44 22.44
HP_ribozyme 1M5K 15!D:7!E C:A Wb* [cWW][-] 11.17 41.11; 65.89 24.78 3.2 0.19 31.93
HP_ribozyme 1M5K 16!D:6!E C:G WC [cWW][XIX] 11.09 52.64; 49.0 3.64 -3.14 0.02 14.52
HP_ribozyme 1M5K 17!D:5!E U:A WC [cWW][XX] 11.06 58.87; 47.18 11.69 -5.17 0.11 12.39
HP_ribozyme 1M5K 18!D:4!E C:G WC [cWW][XIX] 11.07 54.5; 55.73 1.23 -2.96 0.06 6.51
HP_ribozyme 1M5K 19!D:3!E U:A WC [cWW][XX] 11.02 53.45; 52.86 0.59 -1.9 0.23 15.84
HP_ribozyme 1M5K 20!D:2!E C:G WC [cWW][XIX] 10.71 58.36; 51.37 6.99 -3.2 0.29 7.02
HP_ribozyme 1M5K 21!D:1!E C:G WC [cWW][XIX] 10.97 50.15; 51.11 0.96 1.7 0.34 4.17
HP_ribozyme 1M5K 10!E:25!E A:C rpS(sb:O2*-N3) [cSS][-] 5.53 95.86; 148.33 52.46 -68.86 0.4 35.86
HP_ribozyme 1M5K 11!E:24!E G:A rpS(sb:O2*-N3) [---][-] 5.53 149.93; 92.51 57.41 -65.2 0.9 45.13
HP_ribozyme 1M5K 15!E:68!E A:U WC [cWW][XX] 10.49 52.98; 54.08 1.1 -11.56 0.12 15.38
HP_ribozyme 1M5K 16!E:67!E C:G Wb [---][-] 10.29 64.5; 48.49 16.01 -5.97 0.18 13.22
HP_ribozyme 1M5K 17!E:66!E C:G WC [cWW][XIX] 10.31 60.7; 51.3 9.4 -5.14 0.04 12.02
HP_ribozyme 1M5K 18!E:65!E A:U WC [cWW][XX] 10.63 62.82; 54.59 8.23 -7.21 0.26 6.02
HP_ribozyme 1M5K 19!E:64!E G:C WC [cWW][XIX] 10.71 53.13; 57.87 4.74 2.42 0.07 8.98
HP_ribozyme 1M5K 20!E:63!E A:C Wb* [cWW][-] 10.97 73.72; 41.67 32.05 4.0 0.33 13.27
HP_ribozyme 1M5K 21!E:62!E G:A S [tSH][XI] 9.52 96.74; 5.32 91.42 147.99 0.1 7.39
HP_ribozyme 1M5K 22!E:60!E A:U rH_1 [tWH][XXIV] 9.24 27.39; 27.99 0.6 176.89 0.32 11.55
HP_ribozyme 1M5K 23!E:59!E A:A rH [tWH][V] 12.24 17.55; 20.33 2.78 -165.1 0.75 19.65
HP_ribozyme 1M5K 24!E:57!E A:A rpS* [---][-] 11.87 3.94; 51.3 47.36 98.11 0.51 19.2
HP_ribozyme 1M5K 26!E:55!E A:G WC [cWW][VIII] 12.97 44.36; 47.3 2.94 -7.48 0.1 21.78
HP_ribozyme 1M5K 27!E:55!E C:G WC_Mo [cWW][XIX] 10.16 76.51; 59.41 17.11 -18.65 1.71 11.95
HP_ribozyme 1M5K 27!E:54!E C:G WC [cWW][XIX] 10.71 54.93; 54.52 0.41 -11.67 0.38 27.48
HP_ribozyme 1M5K 28!E:53!E A:U WC [cWW][XX] 10.25 58.53; 60.19 1.66 -7.27 0.18 14.5
HP_ribozyme 1M5K 29!E:52!E C:G WC [cWW][XIX] 10.6 57.48; 56.31 1.16 -8.23 0.05 19.72
HP_ribozyme 1M5K 30!E:51!E C:G WC [cWW][XIX] 10.76 54.08; 55.41 1.33 -3.83 0.15 9.04
HP_ribozyme 1M5K 31!E:50!E A:U WC [cWW][XX] 10.6 54.56; 56.97 2.41 -4.49 0.31 9.77
HP_ribozyme 1M5K 32!E:49!E A:U WC [cWW][XX] 10.58 54.04; 56.83 2.79 -12.18 0.61 24.93
HP_ribozyme 1M5K 33!E:48!E C:G WC [cWW][XIX] 10.4 59.0; 55.09 3.91 -7.02 0.36 25.25
HP_ribozyme 1M5K 34!E:47!E C:G WC [cWW][XIX] 10.75 55.68; 52.61 3.07 -7.66 0.08 14.42
HP_ribozyme 1M5K 35!E:46!E C:G WC [cWW][XIX] 10.79 54.8; 53.94 0.85 0.27 0.24 3.44
HP_ribozyme 1M5K 69!E:84!E A:U WC [cWW][XX] 10.64 52.61; 55.14 2.52 -17.24 0.1 18.73
HP_ribozyme 1M5K 70!E:83!E C:G WC [cWW][XIX] 10.67 46.54; 61.56 15.01 -17.07 0.05 22.56
HP_ribozyme 1M5K 71!E:82!E G:C WC [cWW][XIX] 11.05 50.98; 52.67 1.7 -12.99 0.38 12.75
HP_ribozyme 1M5K 72!E:81!E G:U Wb [cWW][XXVIII] 10.74 36.9; 53.66 16.76 1.35 0.61 10.24
HP_ribozyme 1M5K 73!E:80!E G:U WC [---][-] 10.61 54.12; 63.36 9.24 2.14 0.24 1.84
HP_ribozyme 1M5K 74!E:79!E G:C WC [cWW][XIX] 10.45 55.75; 66.21 10.46 -11.46 0.94 7.12
HP_ribozyme 1M5K 75!E:78!E G:A S [tSH][XI] 9.84 80.89; 16.66 64.22 -136.73 1.4 48.65
HP_ribozyme 1M5K 75!E:77!E G:A S(sb:O2*-N7) [---][-] 7.27 76.14; 34.38 41.77 -157.12 2.46 37.45