Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1M5O BPC Identified: 102 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Ribozyme 1M5O 2!A:90!B G:C WC [cWW][XIX] 10.95 46.71; 58.56 11.85 -24.31 0.13 27.04
Ribozyme 1M5O 3!A:89!B C:G WC [cWW][XIX] 10.63 58.02; 63.92 5.9 -9.17 0.45 17.17
Ribozyme 1M5O 4!A:88!B C:G WC [cWW][XIX] 10.98 45.26; 59.49 14.23 8.72 0.13 9.05
Ribozyme 1M5O 5!A:87!B A:U Wb [---][-] 10.82 47.08; 70.09 23.01 -3.3 0.32 9.73
Ribozyme 1M5O 6!A:86!B C:G Wb [---][-] 10.44 65.93; 51.86 14.06 -11.47 1.06 26.46
Ribozyme 1M5O 7!A:85!B C:G WC [cWW][XIX] 10.65 54.31; 54.77 0.46 -2.43 0.27 10.19
Ribozyme 1M5O 8!A:14!B U:A WC [cWW][XX] 11.05 53.83; 60.75 6.91 -10.85 0.16 17.33
Ribozyme 1M5O 9!A:13!B G:C WC [cWW][XIX] 10.53 57.56; 55.78 1.78 -9.17 0.09 15.15
Ribozyme 1M5O 10!A:12!B A:U WC [cWW][XX] 10.79 52.25; 52.94 0.69 -6.91 0.14 12.62
Ribozyme 1M5O 11!A:11!B C:G WC [cWW][XIX] 10.22 65.73; 54.83 10.89 -5.39 0.01 6.4
Ribozyme 1M5O 12!A:9!B A:A S [tSH][-] 9.98 79.76; 4.26 75.5 -121.2 0.04 6.87
Ribozyme 1M5O 13!A:25!B G:C WC [cWW][XIX] 10.54 50.66; 53.89 3.23 -14.23 1.22 30.2
Ribozyme 1M5O 14!A:8!B U:G S*_1 [tHS][-] 11.16 16.3; 97.59 81.3 16.24 0.16 8.84
Ribozyme 1M5O 15!A:7!B C:A Wb* [cWW][-] 11.23 42.83; 74.39 31.56 2.71 0.22 15.89
Ribozyme 1M5O 16!A:6!B C:G WC [cWW][XIX] 10.42 52.67; 59.34 6.67 0.21 0.17 21.61
Ribozyme 1M5O 17!A:5!B U:A WC [cWW][XX] 10.09 53.5; 61.63 8.12 -1.29 0.07 7.48
Ribozyme 1M5O 18!A:4!B C:G WC [cWW][XIX] 10.45 57.54; 52.18 5.37 -6.26 0.17 14.36
Ribozyme 1M5O 19!A:3!B U:A WC [cWW][XX] 10.31 54.27; 56.35 2.08 -8.94 0.07 14.69
Ribozyme 1M5O 20!A:2!B C:G WC [cWW][XIX] 10.6 57.15; 53.88 3.26 -2.27 0.11 9.99
Ribozyme 1M5O 21!A:1!B C:G WC [cWW][XIX] 10.74 54.71; 54.73 0.02 5.28 0.07 8.35
Ribozyme 1M5O 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.48 93.09; 149.54 56.44 -65.21 0.49 40.29
Ribozyme 1M5O 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.5 150.23; 92.47 57.76 -66.35 0.99 44.31
Ribozyme 1M5O 15!B:68!B A:U WC [cWW][XX] 10.64 49.09; 58.61 9.52 -3.62 0.13 9.31
Ribozyme 1M5O 16!B:67!B C:G WC [cWW][XIX] 11.13 55.53; 51.87 3.66 -5.69 0.05 9.41
Ribozyme 1M5O 17!B:66!B C:G WC [cWW][XIX] 10.61 56.07; 49.44 6.63 -6.6 0.16 11.11
Ribozyme 1M5O 18!B:65!B A:U WC [cWW][XX] 10.52 61.38; 54.81 6.58 -7.2 0.23 7.33
Ribozyme 1M5O 19!B:64!B G:C WC [cWW][XIX] 10.42 50.95; 59.41 8.46 -7.8 0.1 10.82
Ribozyme 1M5O 20!B:63!B A:C Wb* [cWW][-] 10.91 64.39; 43.91 20.47 -3.35 0.1 19.13
Ribozyme 1M5O 21!B:62!B G:A S [tSH][XI] 9.5 94.94; 1.62 93.31 130.29 0.31 9.73
Ribozyme 1M5O 22!B:60!B A:U rH_1 [tWH][XXIV] 9.76 23.69; 32.79 9.1 -170.21 0.07 4.67
Ribozyme 1M5O 23!B:59!B A:A rH [tWH][V] 12.48 15.34; 24.28 8.94 170.31 0.32 16.2
Ribozyme 1M5O 24!B:57!B A:A rpS* [---][-] 11.71 3.9; 51.2 47.3 68.72 0.48 22.66
Ribozyme 1M5O 26!B:55!B A:G WC [cWW][VIII] 12.6 49.27; 48.99 0.28 -5.76 0.0 22.31
Ribozyme 1M5O 27!B:55!B C:G WC_Mo [cWW][XIX] 10.09 78.14; 59.75 18.39 -14.55 1.79 10.28
Ribozyme 1M5O 27!B:54!B C:G WC [cWW][XIX] 10.67 55.89; 52.71 3.18 -11.73 0.23 19.99
Ribozyme 1M5O 28!B:53!B A:U WC [cWW][XX] 10.56 55.28; 55.37 0.08 -7.61 0.1 12.67
Ribozyme 1M5O 29!B:52!B C:G WC [cWW][XIX] 10.42 54.63; 54.72 0.09 -9.89 0.22 19.1
Ribozyme 1M5O 30!B:51!B C:G WC [cWW][XIX] 10.59 55.39; 55.43 0.04 -5.93 0.09 12.99
Ribozyme 1M5O 31!B:50!B A:U WC [cWW][XX] 10.47 55.62; 56.62 1.0 -6.9 0.12 9.67
Ribozyme 1M5O 32!B:49!B A:U WC [cWW][XX] 10.48 52.53; 54.66 2.13 -10.35 0.85 23.22
Ribozyme 1M5O 33!B:48!B C:G WC [cWW][XIX] 10.67 52.74; 53.82 1.08 -9.3 0.29 24.29
Ribozyme 1M5O 34!B:47!B C:G WC [cWW][XIX] 10.59 55.53; 53.23 2.3 -7.23 0.12 15.94
Ribozyme 1M5O 35!B:46!B C:G WC [cWW][XIX] 10.68 56.08; 53.58 2.5 -4.76 0.08 6.32
Ribozyme 1M5O 69!B:84!B A:U WC [cWW][XX] 10.25 55.03; 54.87 0.16 -24.24 0.72 23.68
Ribozyme 1M5O 70!B:83!B C:G Wb* [---][-] 10.98 44.41; 63.1 18.69 -8.74 0.29 22.66
Ribozyme 1M5O 71!B:82!B G:C WC [cWW][XIX] 10.73 57.05; 51.68 5.38 -1.66 0.09 5.05
Ribozyme 1M5O 72!B:81!B G:U Wb [cWW][XXVIII] 10.27 46.86; 60.3 13.44 -11.13 0.11 21.24
Ribozyme 1M5O 73!B:80!B G:U H_2 [---][-] 10.69 24.09; 59.41 35.32 2.31 0.0 17.06
Ribozyme 1M5O 74!B:79!B G:C WC [cWW][XIX] 10.71 55.82; 62.84 7.02 11.12 0.14 16.97
Ribozyme 1M5O 75!B:78!B G:A S [tSH][XI] 9.3 92.64; 12.03 80.61 -89.1 0.38 22.15
Ribozyme 1M5O 75!B:77!B G:A S(sb:O2*-N7) [---][-] 7.87 85.42; 29.84 55.57 -160.88 1.54 31.76
Ribozyme 1M5O 1!D:91!E G:C WC [cWW][XIX] 10.51 57.32; 49.06 8.27 -28.8 0.33 28.36
Ribozyme 1M5O 2!D:90!E G:C WC [cWW][XIX] 11.31 45.43; 47.15 1.73 -3.15 0.12 4.14
Ribozyme 1M5O 3!D:89!E C:G WC [cWW][XIX] 10.37 65.54; 55.02 10.52 -6.54 0.06 17.77
Ribozyme 1M5O 4!D:88!E C:G WC [cWW][XIX] 10.67 55.08; 59.49 4.41 -1.22 0.09 5.12
Ribozyme 1M5O 5!D:87!E A:U WC [cWW][XX] 10.65 48.72; 57.66 8.95 -1.35 0.65 10.95
Ribozyme 1M5O 6!D:86!E C:G Wb [---][-] 10.43 62.98; 42.9 20.09 -12.71 0.59 17.43
Ribozyme 1M5O 7!D:85!E C:G WC [cWW][XIX] 10.48 59.58; 54.74 4.84 -1.66 0.01 4.04
Ribozyme 1M5O 8!D:14!E U:A WC [cWW][XX] 10.83 56.12; 55.58 0.54 -4.61 0.11 11.82
Ribozyme 1M5O 9!D:13!E G:C WC [cWW][XIX] 10.4 59.93; 55.64 4.29 -10.55 0.08 13.85
Ribozyme 1M5O 10!D:12!E A:U WC [cWW][XX] 10.85 51.98; 54.21 2.23 -5.9 0.01 6.32
Ribozyme 1M5O 11!D:11!E C:G WC [cWW][XIX] 10.45 60.35; 56.75 3.6 -5.7 0.12 5.86
Ribozyme 1M5O 12!D:9!E A:A S [tSH][-] 10.1 77.31; 3.5 73.81 -72.73 0.2 13.55
Ribozyme 1M5O 13!D:25!E G:C WC [cWW][XIX] 10.55 51.84; 54.81 2.97 -18.35 0.71 28.05
Ribozyme 1M5O 14!D:8!E U:G S*_1 [tHS][-] 11.41 14.04; 95.92 81.88 18.12 0.08 21.98
Ribozyme 1M5O 15!D:7!E C:A Wb* [cWW][-] 11.55 39.13; 64.94 25.81 -5.65 0.19 25.25
Ribozyme 1M5O 16!D:6!E C:G WC [cWW][XIX] 10.96 48.26; 53.77 5.51 -12.07 0.63 22.68
Ribozyme 1M5O 17!D:5!E U:A WC [cWW][XX] 10.66 53.33; 55.55 2.23 -7.29 0.0 10.04
Ribozyme 1M5O 18!D:4!E C:G WC [cWW][XIX] 10.68 55.83; 55.39 0.44 -4.53 0.26 11.0
Ribozyme 1M5O 19!D:3!E U:A WC [cWW][XX] 10.45 55.14; 56.58 1.43 -3.9 0.06 8.91
Ribozyme 1M5O 20!D:2!E C:G WC [cWW][XIX] 10.66 55.25; 51.42 3.83 -2.37 0.3 13.71
Ribozyme 1M5O 21!D:1!E C:G WC [cWW][XIX] 10.65 55.22; 54.71 0.5 3.82 0.28 7.8
Ribozyme 1M5O 10!E:25!E A:C rpS(sb:O2*-N3) [cSS][-] 5.69 95.24; 150.61 55.37 -73.36 0.32 45.29
Ribozyme 1M5O 11!E:24!E G:A rpS(sb:O2*-N3) [---][-] 5.65 151.68; 89.85 61.82 -70.04 1.53 44.68
Ribozyme 1M5O 15!E:68!E A:U WC [cWW][XX] 10.53 53.28; 52.2 1.08 -3.63 0.25 9.45
Ribozyme 1M5O 16!E:67!E C:G WC [cWW][XIX] 10.52 54.45; 49.59 4.86 -7.24 0.05 12.6
Ribozyme 1M5O 17!E:66!E C:G WC [cWW][XIX] 10.59 56.64; 50.33 6.31 -6.21 0.03 9.84
Ribozyme 1M5O 18!E:65!E A:U WC [cWW][XX] 10.44 59.4; 58.42 0.99 -3.44 0.03 5.51
Ribozyme 1M5O 19!E:64!E G:C WC [cWW][XIX] 10.72 55.2; 55.89 0.69 -5.28 0.19 10.68
Ribozyme 1M5O 20!E:63!E A:C Wb* [cWW][-] 10.73 74.53; 43.97 30.56 0.26 0.04 17.76
Ribozyme 1M5O 21!E:62!E G:A S [tSH][XI] 9.56 98.13; 3.58 94.55 78.75 0.0 9.31
Ribozyme 1M5O 22!E:60!E A:U rH_1 [tWH][XXIV] 9.65 25.08; 32.06 6.99 -166.64 0.3 7.3
Ribozyme 1M5O 23!E:61!E A:U WC [cWW][XX] 10.02 44.28; 64.66 20.38 30.24 1.88 68.65
Ribozyme 1M5O 23!E:59!E A:A rH [tWH][V] 12.47 16.96; 20.67 3.71 167.0 0.51 21.64
Ribozyme 1M5O 24!E:57!E A:A rpS* [---][-] 11.69 1.5; 56.0 54.49 71.76 0.86 19.45
Ribozyme 1M5O 26!E:55!E A:G WC [cWW][VIII] 12.94 48.48; 46.78 1.7 -9.25 0.02 22.34
Ribozyme 1M5O 27!E:54!E C:G WC [cWW][XIX] 10.66 56.33; 52.87 3.47 -12.0 0.4 23.5
Ribozyme 1M5O 28!E:53!E A:U WC [cWW][XX] 10.2 57.12; 58.7 1.59 -9.0 0.01 11.5
Ribozyme 1M5O 29!E:52!E C:G WC [cWW][XIX] 10.53 57.67; 54.19 3.48 -11.71 0.05 15.37
Ribozyme 1M5O 30!E:51!E C:G WC [cWW][XIX] 10.69 54.75; 54.93 0.18 -7.62 0.04 16.35
Ribozyme 1M5O 31!E:50!E A:U WC [cWW][XX] 10.65 54.94; 54.18 0.76 -4.32 0.2 11.52
Ribozyme 1M5O 32!E:49!E A:U WC [cWW][XX] 10.81 52.26; 54.05 1.78 -9.06 0.37 19.1
Ribozyme 1M5O 33!E:48!E C:G WC [cWW][XIX] 10.57 57.1; 56.35 0.76 -4.2 0.34 20.66
Ribozyme 1M5O 34!E:47!E C:G WC [cWW][XIX] 10.75 55.15; 54.45 0.71 -5.63 0.11 14.28
Ribozyme 1M5O 35!E:46!E C:G WC [cWW][XIX] 10.85 54.6; 53.62 0.98 -2.57 0.06 4.99
Ribozyme 1M5O 69!E:84!E A:U WC [cWW][XX] 9.97 56.46; 67.83 11.37 -17.51 0.0 19.15
Ribozyme 1M5O 70!E:83!E C:G WC [cWW][XIX] 10.55 56.06; 60.49 4.43 -11.16 0.14 15.54
Ribozyme 1M5O 71!E:82!E G:C WC [cWW][XIX] 10.91 54.65; 51.33 3.32 -11.38 0.17 16.38
Ribozyme 1M5O 72!E:81!E G:U Wb [cWW][XXVIII] 10.99 45.34; 56.96 11.62 3.18 0.3 6.91
Ribozyme 1M5O 73!E:80!E G:U Wb [cWW][XXVIII] 10.31 51.9; 72.35 20.45 4.28 0.21 6.89
Ribozyme 1M5O 74!E:79!E G:C WC_Mo [cWW][XIX] 10.48 58.51; 73.21 14.71 -6.27 0.37 6.09
Ribozyme 1M5O 75!E:78!E G:A S_mo [tSH][XI] 10.3 78.05; 24.51 53.54 -147.74 1.21 44.02