Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1M5P BPC Identified: 99 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 1M5P 2!A:90!B G:C WC [cWW][XIX] 10.84 42.53; 51.89 9.35 -22.19 0.12 27.21
HP_ribozyme 1M5P 3!A:89!B C:G WC_Mo [cWW][XIX] 10.41 65.6; 63.86 1.73 -18.72 0.1 23.79
HP_ribozyme 1M5P 4!A:88!B C:G WC [cWW][XIX] 10.86 51.07; 60.23 9.15 10.43 0.74 14.44
HP_ribozyme 1M5P 5!A:87!B A:U WC [cWW][XX] 10.42 55.8; 64.04 8.24 -4.08 0.17 7.66
HP_ribozyme 1M5P 6!A:86!B C:G Wb [---][-] 10.55 64.23; 49.86 14.37 -9.88 0.9 27.56
HP_ribozyme 1M5P 7!A:85!B C:G WC [cWW][XIX] 10.55 58.12; 50.31 7.8 0.85 0.15 9.1
HP_ribozyme 1M5P 8!A:14!B U:A WC [cWW][XX] 11.3 55.19; 57.04 1.85 -11.81 0.04 23.8
HP_ribozyme 1M5P 9!A:13!B G:C WC [cWW][XIX] 10.58 60.05; 54.83 5.22 -6.65 0.19 13.39
HP_ribozyme 1M5P 10!A:12!B A:U WC [cWW][XX] 10.82 54.86; 50.98 3.88 -5.4 0.1 12.47
HP_ribozyme 1M5P 11!A:11!B C:G WC [cWW][XIX] 10.31 61.66; 55.4 6.25 -3.33 0.08 3.84
HP_ribozyme 1M5P 13!M:25!B G:C WC [cWW][XIX] 10.75 48.95; 53.54 4.59 -18.43 1.5 36.1
HP_ribozyme 1M5P 14!M:8!B U:G S*_1 [tHS][-] 11.3 15.67; 95.52 79.85 15.53 0.44 15.18
HP_ribozyme 1M5P 15!M:7!B C:A Wb* [cWW][-] 11.6 46.27; 63.98 17.72 -1.95 0.95 19.64
HP_ribozyme 1M5P 16!M:6!B C:G Wb* [---][-] 10.51 50.57; 69.83 19.26 1.2 0.54 25.43
HP_ribozyme 1M5P 17!M:5!B U:A WC [cWW][XX] 10.11 57.2; 60.08 2.88 2.72 0.07 5.86
HP_ribozyme 1M5P 18!M:4!B C:G WC [cWW][XIX] 10.48 57.71; 50.36 7.36 -2.93 0.36 14.15
HP_ribozyme 1M5P 19!M:3!B U:A WC [cWW][XX] 10.59 55.04; 56.7 1.66 -6.17 0.07 12.35
HP_ribozyme 1M5P 20!M:2!B C:G WC [cWW][XIX] 10.81 61.03; 52.43 8.6 1.59 0.26 9.99
HP_ribozyme 1M5P 21!M:1!B C:G WC [cWW][XIX] 10.64 55.22; 54.86 0.36 1.99 0.21 6.04
HP_ribozyme 1M5P 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.35 91.56; 150.15 58.59 -69.66 0.01 37.46
HP_ribozyme 1M5P 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.72 150.11; 94.25 55.86 -64.34 1.5 46.11
HP_ribozyme 1M5P 15!B:68!B A:U WC [cWW][XX] 10.66 51.9; 55.53 3.63 1.56 0.39 6.08
HP_ribozyme 1M5P 16!B:67!B C:G Wb [---][-] 10.81 66.28; 48.87 17.41 -9.4 0.07 14.29
HP_ribozyme 1M5P 17!B:66!B C:G WC [cWW][XIX] 10.59 54.43; 56.68 2.25 -5.42 0.02 8.8
HP_ribozyme 1M5P 18!B:65!B A:U WC [cWW][XX] 10.53 62.01; 59.28 2.73 -4.98 0.05 6.55
HP_ribozyme 1M5P 19!B:64!B G:C WC [cWW][XIX] 10.47 49.68; 58.89 9.21 -5.23 0.01 6.95
HP_ribozyme 1M5P 20!B:63!B A:C Wb* [cWW][-] 10.89 69.87; 44.26 25.61 1.08 0.05 16.05
HP_ribozyme 1M5P 21!B:62!B G:A S [tSH][XI] 9.65 96.56; 5.2 91.35 48.05 0.21 8.55
HP_ribozyme 1M5P 22!B:60!B A:U rH_1 [tWH][XXIV] 9.39 26.47; 28.2 1.73 170.84 0.11 3.42
HP_ribozyme 1M5P 23!B:61!B A:U WC [cWW][XX] 10.0 48.03; 60.74 12.71 31.72 1.62 65.49
HP_ribozyme 1M5P 23!B:59!B A:A rH [tWH][V] 12.49 13.09; 22.51 9.42 169.79 0.37 26.1
HP_ribozyme 1M5P 24!B:57!B A:A rpS* [---][-] 11.84 2.1; 48.59 46.49 101.22 0.31 10.04
HP_ribozyme 1M5P 26!B:55!B A:G WC [cWW][VIII] 12.5 49.64; 54.14 4.5 -0.81 0.04 18.05
HP_ribozyme 1M5P 27!B:54!B C:G WC [cWW][XIX] 10.62 54.38; 55.25 0.86 -12.27 0.42 24.74
HP_ribozyme 1M5P 28!B:53!B A:U WC [cWW][XX] 10.28 56.1; 58.49 2.39 -4.77 0.18 9.38
HP_ribozyme 1M5P 29!B:52!B C:G WC [cWW][XIX] 10.51 55.33; 55.27 0.05 -10.11 0.29 17.28
HP_ribozyme 1M5P 30!B:51!B C:G WC [cWW][XIX] 10.47 56.62; 57.08 0.46 -3.69 0.63 13.33
HP_ribozyme 1M5P 31!B:50!B A:U WC [cWW][XX] 10.51 58.98; 52.76 6.22 -10.43 0.2 14.28
HP_ribozyme 1M5P 32!B:49!B A:U WC [cWW][XX] 10.47 56.01; 52.82 3.19 -9.91 0.66 20.64
HP_ribozyme 1M5P 33!B:48!B C:G WC [cWW][XIX] 10.77 48.79; 55.1 6.31 -4.85 0.12 22.65
HP_ribozyme 1M5P 34!B:47!B C:G WC [cWW][XIX] 10.66 56.07; 53.32 2.75 -6.81 0.35 17.26
HP_ribozyme 1M5P 35!B:46!B C:G WC [cWW][XIX] 10.54 55.51; 54.45 1.07 -0.97 0.12 6.24
HP_ribozyme 1M5P 69!B:84!B A:U WC [cWW][XX] 11.16 46.21; 54.03 7.82 -13.48 0.26 16.6
HP_ribozyme 1M5P 70!B:83!B C:G WC [cWW][XIX] 10.76 45.44; 63.21 17.77 -10.14 0.13 28.92
HP_ribozyme 1M5P 71!B:82!B G:C WC [cWW][XIX] 10.29 59.78; 64.51 4.73 -10.02 0.43 15.76
HP_ribozyme 1M5P 72!B:81!B G:U Wb [cWW][XXVIII] 10.12 44.14; 62.72 18.59 -6.28 0.08 22.67
HP_ribozyme 1M5P 73!B:80!B G:U H_2 [---][-] 10.35 21.69; 65.98 44.29 7.33 0.76 23.78
HP_ribozyme 1M5P 74!B:79!B G:C Wb [---][-] 10.64 41.3; 69.13 27.83 17.46 0.4 22.99
HP_ribozyme 1M5P 75!B:78!B G:A S [tSH][XI] 9.66 89.52; 11.69 77.83 -117.81 0.96 32.81
HP_ribozyme 1M5P 75!B:77!B G:A S(sb:O2*-N7) [---][-] 7.39 86.0; 27.88 58.11 -158.87 1.73 38.66
HP_ribozyme 1M5P 1!D:91!E G:C WC [cWW][XIX] 10.68 57.26; 46.34 10.92 -27.42 0.45 24.7
HP_ribozyme 1M5P 2!D:90!E G:C WC_mo [cWW][XIX] 11.76 46.43; 44.4 2.03 -7.6 0.01 24.65
HP_ribozyme 1M5P 4!D:88!E C:G WC [cWW][XIX] 10.38 61.04; 61.71 0.66 -6.42 0.16 7.94
HP_ribozyme 1M5P 5!D:87!E A:U WC [cWW][XX] 11.04 53.99; 48.63 5.35 2.8 0.64 5.52
HP_ribozyme 1M5P 6!D:86!E C:G Wb [---][-] 10.72 58.93; 46.0 12.92 -11.29 0.71 24.49
HP_ribozyme 1M5P 7!D:85!E C:G WC [cWW][XIX] 10.71 58.82; 53.66 5.17 6.7 0.17 11.06
HP_ribozyme 1M5P 8!D:14!E U:A WC [cWW][XX] 10.69 61.39; 55.06 6.33 -6.99 0.47 16.52
HP_ribozyme 1M5P 9!D:13!E G:C WC [cWW][XIX] 10.54 57.37; 57.44 0.07 -9.37 0.12 8.98
HP_ribozyme 1M5P 10!D:12!E A:U WC [cWW][XX] 10.82 55.66; 52.75 2.91 -8.34 0.22 7.32
HP_ribozyme 1M5P 11!D:11!E C:G WC [cWW][XIX] 10.47 60.61; 58.2 2.41 -6.2 0.47 4.77
HP_ribozyme 1M5P 12!D:9!E A:A S [tSH][-] 10.59 83.86; 3.54 80.32 -24.22 0.16 8.27
HP_ribozyme 1M5P 13!P:25!E G:C WC [cWW][XIX] 10.72 51.33; 50.25 1.08 -15.68 0.05 20.52
HP_ribozyme 1M5P 14!P:8!E U:G S*_1 [tHS][-] 10.89 15.33; 97.98 82.65 24.67 0.53 28.95
HP_ribozyme 1M5P 15!P:7!E C:A Wb* [cWW][-] 11.35 39.57; 64.26 24.69 -3.01 0.67 35.52
HP_ribozyme 1M5P 16!P:6!E C:G WC [cWW][XIX] 11.35 46.33; 46.68 0.36 -10.69 0.53 22.81
HP_ribozyme 1M5P 17!P:5!E U:A WC [cWW][XX] 10.86 53.86; 56.36 2.49 -10.49 0.32 19.88
HP_ribozyme 1M5P 18!P:4!E C:G WC [cWW][XIX] 11.07 55.74; 57.55 1.81 -3.26 0.2 13.69
HP_ribozyme 1M5P 19!P:3!E U:A WC [cWW][XX] 10.82 50.83; 54.45 3.62 -2.98 0.35 9.62
HP_ribozyme 1M5P 20!P:2!E C:G WC [cWW][XIX] 10.57 58.32; 52.19 6.13 -5.04 0.08 23.18
HP_ribozyme 1M5P 21!P:1!E C:G WC [cWW][XIX] 10.79 53.61; 52.89 0.73 -4.41 0.35 4.02
HP_ribozyme 1M5P 10!E:25!E A:C rpS(sb:O2*-N3) [cSS][-] 5.71 96.3; 144.31 48.01 -69.55 0.69 53.52
HP_ribozyme 1M5P 11!E:24!E G:A rpS(sb:O2*-N3) [---][-] 5.55 156.85; 91.21 65.64 -66.97 1.6 42.68
HP_ribozyme 1M5P 15!E:68!E A:U WC [cWW][XX] 10.36 56.23; 56.12 0.11 8.61 0.02 5.39
HP_ribozyme 1M5P 16!E:67!E C:G WC [cWW][XIX] 10.7 56.69; 48.75 7.94 -4.73 0.3 11.31
HP_ribozyme 1M5P 17!E:66!E C:G WC [cWW][XIX] 10.33 59.72; 54.49 5.23 -3.59 0.05 10.41
HP_ribozyme 1M5P 18!E:65!E A:U WC [cWW][XX] 10.25 61.94; 59.57 2.37 -5.63 0.31 5.15
HP_ribozyme 1M5P 19!E:64!E G:C WC [cWW][XIX] 10.6 54.12; 55.06 0.93 -1.11 0.16 14.24
HP_ribozyme 1M5P 20!E:63!E A:C Wb* [cWW][-] 10.8 73.56; 43.9 29.65 0.68 0.03 20.54
HP_ribozyme 1M5P 21!E:62!E G:A S [tSH][XI] 9.53 99.76; 3.94 95.82 77.62 0.03 12.84
HP_ribozyme 1M5P 22!E:60!E A:U rH_1 [tWH][XXIV] 9.96 23.59; 28.95 5.37 -166.42 0.68 3.96
HP_ribozyme 1M5P 23!E:61!E A:U WC [cWW][XX] 9.92 45.34; 62.34 17.0 32.62 1.3 66.04
HP_ribozyme 1M5P 23!E:59!E A:A rH [tWH][V] 12.51 15.04; 20.23 5.19 168.28 0.4 23.01
HP_ribozyme 1M5P 24!E:57!E A:A rpS* [---][-] 11.96 0.19; 50.45 50.26 132.1 0.77 18.63
HP_ribozyme 1M5P 26!E:55!E A:G WC [cWW][VIII] 12.93 43.76; 48.13 4.37 -9.4 0.0 18.64
HP_ribozyme 1M5P 27!E:54!E C:G WC [cWW][XIX] 10.63 58.17; 54.31 3.85 -9.49 0.53 23.8
HP_ribozyme 1M5P 28!E:53!E A:U WC [cWW][XX] 9.9 59.93; 60.08 0.15 -4.65 0.15 8.16
HP_ribozyme 1M5P 29!E:52!E C:G WC [cWW][XIX] 10.63 55.98; 57.61 1.63 -11.76 0.12 20.5
HP_ribozyme 1M5P 30!E:51!E C:G WC [cWW][XIX] 10.72 54.37; 54.47 0.09 -8.83 0.07 18.74
HP_ribozyme 1M5P 31!E:50!E A:U WC [cWW][XX] 10.68 53.06; 50.99 2.07 -8.38 0.04 14.21
HP_ribozyme 1M5P 32!E:49!E A:U WC [cWW][XX] 10.53 54.47; 54.01 0.46 -8.49 0.42 21.47
HP_ribozyme 1M5P 33!E:48!E C:G WC [cWW][XIX] 10.54 57.55; 55.28 2.27 -7.29 0.7 23.48
HP_ribozyme 1M5P 34!E:47!E C:G WC [cWW][XIX] 10.86 56.4; 54.7 1.7 -1.96 0.05 7.79
HP_ribozyme 1M5P 35!E:46!E C:G WC [cWW][XIX] 10.79 57.47; 55.87 1.61 4.28 0.03 8.34
HP_ribozyme 1M5P 69!E:84!E A:U Wb [---][-] 10.44 47.29; 65.72 18.42 -12.15 0.18 17.46
HP_ribozyme 1M5P 70!E:83!E C:G WC [cWW][XIX] 10.33 63.7; 58.59 5.11 -14.51 0.11 17.1
HP_ribozyme 1M5P 71!E:82!E G:C WC [cWW][XIX] 11.06 56.8; 45.05 11.75 -5.24 0.09 11.08
HP_ribozyme 1M5P 72!E:81!E G:U WC_mo [---][-] 11.52 46.05; 49.94 3.89 1.01 0.18 3.9
HP_ribozyme 1M5P 73!E:80!E G:U Wb [cWW][XXVIII] 11.17 45.67; 60.0 14.33 1.67 0.26 5.13
HP_ribozyme 1M5P 74!E:79!E G:C Wb [---][-] 10.59 46.32; 70.44 24.12 -19.87 0.91 25.72