Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1M5V BPC Identified: 102 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 1M5V 2!A:90!B G:C Wb [---][-] 11.4 41.02; 54.91 13.89 -23.37 0.1 30.68
HP_ribozyme 1M5V 3!A:89!B C:G WC_Mo [cWW][XIX] 10.68 58.94; 65.69 6.75 -8.7 0.29 20.3
HP_ribozyme 1M5V 4!A:88!B C:G WC [cWW][XIX] 11.34 48.45; 57.14 8.69 12.92 0.19 11.68
HP_ribozyme 1M5V 5!A:87!B A:U WC [cWW][XX] 10.63 56.33; 63.53 7.19 -4.67 0.04 6.42
HP_ribozyme 1M5V 6!A:86!B C:G Wb [---][-] 10.5 67.55; 51.63 15.92 -8.39 0.74 19.19
HP_ribozyme 1M5V 7!A:85!B C:G WC [cWW][XIX] 10.58 59.29; 52.04 7.24 0.76 0.04 8.94
HP_ribozyme 1M5V 8!A:14!B U:A WC [cWW][XX] 10.85 59.97; 58.38 1.59 -10.58 0.15 20.07
HP_ribozyme 1M5V 9!A:13!B G:C WC [cWW][XIX] 10.47 58.22; 57.33 0.89 -8.01 0.05 15.47
HP_ribozyme 1M5V 10!A:12!B A:U WC [cWW][XX] 10.71 55.98; 53.15 2.83 -8.02 0.06 13.14
HP_ribozyme 1M5V 11!A:11!B C:G WC [cWW][XIX] 10.37 60.72; 56.1 4.62 -0.94 0.16 2.8
HP_ribozyme 1M5V 13!M:25!B G:C WC [cWW][XIX] 10.61 49.45; 53.81 4.36 -13.69 1.27 30.92
HP_ribozyme 1M5V 14!M:8!B U:G S*_1 [tHS][-] 11.45 13.8; 91.98 78.18 27.58 0.33 17.34
HP_ribozyme 1M5V 15!M:7!B C:A Wb* [cWW][-] 10.78 45.76; 78.09 32.32 1.53 0.5 22.79
HP_ribozyme 1M5V 16!M:6!B C:G WC [cWW][XIX] 10.65 50.76; 56.93 6.17 0.39 0.43 16.36
HP_ribozyme 1M5V 17!M:5!B U:A WC [cWW][XX] 10.58 52.48; 59.59 7.11 8.16 0.41 12.41
HP_ribozyme 1M5V 18!M:4!B C:G WC [cWW][XIX] 10.76 55.79; 50.7 5.09 -3.03 0.27 18.15
HP_ribozyme 1M5V 19!M:3!B U:A WC [cWW][XX] 10.34 54.53; 55.4 0.87 -7.12 0.05 15.21
HP_ribozyme 1M5V 20!M:2!B C:G WC [cWW][XIX] 10.64 58.6; 53.24 5.36 -3.11 0.15 9.58
HP_ribozyme 1M5V 21!M:1!B C:G WC [cWW][XIX] 10.75 54.31; 53.33 0.98 2.72 0.16 4.2
HP_ribozyme 1M5V 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.38 92.5; 151.85 59.35 -68.1 0.62 39.37
HP_ribozyme 1M5V 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.59 150.83; 94.95 55.88 -60.22 1.21 43.25
HP_ribozyme 1M5V 15!B:68!B A:U WC [cWW][XX] 10.75 50.53; 55.23 4.7 5.06 0.08 4.97
HP_ribozyme 1M5V 16!B:67!B C:G WC_Mo [cWW][XIX] 11.27 61.98; 50.32 11.67 -6.07 0.04 9.94
HP_ribozyme 1M5V 17!B:66!B C:G WC [cWW][XIX] 10.9 50.98; 51.43 0.46 -2.85 0.13 10.9
HP_ribozyme 1M5V 18!B:65!B A:U WC [cWW][XX] 10.6 63.18; 54.33 8.84 -7.94 0.13 8.85
HP_ribozyme 1M5V 19!B:64!B G:C WC [cWW][XIX] 10.44 47.99; 58.27 10.28 -7.49 0.01 9.51
HP_ribozyme 1M5V 20!B:63!B A:C Wb* [cWW][-] 11.15 67.92; 41.09 26.83 -0.38 0.04 15.72
HP_ribozyme 1M5V 21!B:62!B G:A S [tSH][XI] 9.5 94.41; 3.99 90.42 130.4 0.38 11.47
HP_ribozyme 1M5V 22!B:60!B A:U rH_1 [tWH][XXIV] 9.59 25.08; 33.9 8.81 -173.45 0.24 5.44
HP_ribozyme 1M5V 23!B:59!B A:A rH [tWH][V] 12.32 15.84; 24.12 8.28 170.39 0.36 17.11
HP_ribozyme 1M5V 24!B:57!B A:A rpS* [---][-] 11.45 2.63; 55.11 52.47 128.86 0.19 13.91
HP_ribozyme 1M5V 26!B:55!B A:G WC [cWW][VIII] 12.63 47.63; 49.92 2.29 -5.25 0.14 20.89
HP_ribozyme 1M5V 27!B:54!B C:G WC [cWW][XIX] 10.68 56.25; 54.64 1.6 -13.78 0.52 27.08
HP_ribozyme 1M5V 28!B:53!B A:U WC [cWW][XX] 10.37 56.05; 58.02 1.97 -8.94 0.3 14.65
HP_ribozyme 1M5V 29!B:52!B C:G WC [cWW][XIX] 10.38 56.48; 54.69 1.8 -8.71 0.39 18.04
HP_ribozyme 1M5V 30!B:51!B C:G WC [cWW][XIX] 10.67 53.67; 57.4 3.73 -6.46 0.09 12.74
HP_ribozyme 1M5V 31!B:50!B A:U WC [cWW][XX] 10.52 56.12; 54.24 1.88 -9.69 0.19 15.36
HP_ribozyme 1M5V 32!B:49!B A:U WC [cWW][XX] 10.64 53.38; 53.03 0.35 -14.02 0.94 27.51
HP_ribozyme 1M5V 33!B:48!B C:G WC [cWW][XIX] 10.69 51.48; 54.06 2.58 -5.53 0.37 23.88
HP_ribozyme 1M5V 34!B:47!B C:G WC [cWW][XIX] 10.59 56.21; 52.98 3.23 -6.32 0.13 14.3
HP_ribozyme 1M5V 35!B:46!B C:G WC [cWW][XIX] 10.64 56.4; 54.6 1.79 -2.34 0.18 5.65
HP_ribozyme 1M5V 69!B:84!B A:U WC [cWW][XX] 10.94 43.23; 58.76 15.53 -17.3 0.37 21.75
HP_ribozyme 1M5V 70!B:83!B C:G Wb* [---][-] 10.79 48.37; 65.24 16.86 -6.58 0.46 27.32
HP_ribozyme 1M5V 71!B:82!B G:C WC [cWW][XIX] 10.52 65.57; 49.16 16.41 -5.49 0.15 8.04
HP_ribozyme 1M5V 72!B:81!B G:U Wb [cWW][XXVIII] 10.25 46.23; 62.21 15.98 -7.36 0.37 21.61
HP_ribozyme 1M5V 73!B:80!B G:U H_2 [---][-] 10.44 23.17; 60.98 37.82 6.03 0.45 26.15
HP_ribozyme 1M5V 74!B:79!B G:C Wb [---][-] 10.7 44.68; 65.51 20.83 16.73 0.02 17.02
HP_ribozyme 1M5V 75!B:78!B G:A S [tSH][XI] 9.54 92.94; 11.81 81.14 -114.51 1.41 38.0
HP_ribozyme 1M5V 75!B:77!B G:A S(sb:O2*-N7) [---][-] 7.61 88.58; 26.13 62.45 -161.32 1.71 38.13
HP_ribozyme 1M5V 1!D:91!E G:C WC [cWW][XIX] 10.58 55.21; 46.49 8.72 -21.07 0.14 22.0
HP_ribozyme 1M5V 2!D:90!E G:C WC_mo [cWW][XIX] 11.72 44.77; 46.17 1.4 -5.53 0.02 16.35
HP_ribozyme 1M5V 3!D:89!E C:G WC [cWW][XIX] 10.14 70.14; 54.24 15.91 -14.12 0.03 22.25
HP_ribozyme 1M5V 4!D:88!E C:G WC [cWW][XIX] 10.71 60.93; 59.71 1.22 -3.27 0.3 9.02
HP_ribozyme 1M5V 5!D:87!E A:U WC [cWW][XX] 11.24 53.55; 45.06 8.49 1.65 0.37 4.92
HP_ribozyme 1M5V 6!D:86!E C:G Wb [---][-] 10.6 58.83; 43.54 15.29 -6.89 0.31 17.99
HP_ribozyme 1M5V 7!D:85!E C:G WC [cWW][XIX] 10.59 55.25; 58.22 2.97 -3.87 0.31 12.42
HP_ribozyme 1M5V 8!D:14!E U:A WC [cWW][XX] 11.16 58.67; 55.83 2.84 -3.44 0.05 10.22
HP_ribozyme 1M5V 9!D:13!E G:C WC [cWW][XIX] 10.49 58.87; 56.46 2.4 -10.23 0.57 18.64
HP_ribozyme 1M5V 10!D:12!E A:U WC [cWW][XX] 10.52 54.43; 54.66 0.23 -8.21 0.2 11.07
HP_ribozyme 1M5V 11!D:11!E C:G WC [cWW][XIX] 10.38 61.97; 55.32 6.65 -6.72 0.34 5.76
HP_ribozyme 1M5V 12!D:9!E A:A S [tSH][-] 10.25 89.98; 6.46 83.52 -88.01 0.14 11.98
HP_ribozyme 1M5V 13!P:25!E G:C WC [cWW][XIX] 10.72 50.8; 51.4 0.6 -19.28 0.78 30.71
HP_ribozyme 1M5V 14!P:8!E U:G S*_1 [tHS][-] 11.3 14.06; 97.08 83.02 25.11 0.39 22.77
HP_ribozyme 1M5V 15!P:7!E C:A Wb* [cWW][-] 11.41 39.93; 64.93 25.0 -5.79 0.02 29.61
HP_ribozyme 1M5V 16!P:6!E C:G WC [cWW][XIX] 11.24 49.73; 51.73 1.99 -7.96 0.29 22.26
HP_ribozyme 1M5V 17!P:5!E U:A WC [cWW][XX] 10.73 56.44; 55.61 0.82 -6.53 0.36 12.71
HP_ribozyme 1M5V 18!P:4!E C:G WC [cWW][XIX] 10.55 58.66; 54.4 4.26 -2.66 0.33 14.48
HP_ribozyme 1M5V 19!P:3!E U:A WC [cWW][XX] 10.47 52.96; 57.86 4.9 -3.15 0.23 9.4
HP_ribozyme 1M5V 20!P:2!E C:G WC [cWW][XIX] 10.62 55.53; 55.32 0.21 -2.56 0.43 14.72
HP_ribozyme 1M5V 21!P:1!E C:G WC [cWW][XIX] 10.68 54.16; 54.43 0.27 -1.56 0.18 6.89
HP_ribozyme 1M5V 10!E:25!E A:C rpS(sb:O2*-N3) [cSS][-] 5.55 91.23; 147.2 55.97 -76.16 0.48 44.18
HP_ribozyme 1M5V 11!E:24!E G:A rpS(sb:O2*-N3) [---][-] 5.6 150.89; 91.58 59.3 -65.46 1.34 43.1
HP_ribozyme 1M5V 15!E:68!E A:U WC [cWW][XX] 10.7 50.02; 61.75 11.73 1.84 0.24 1.34
HP_ribozyme 1M5V 16!E:67!E C:G WC [cWW][XIX] 10.55 57.28; 49.64 7.64 -8.68 0.07 13.76
HP_ribozyme 1M5V 17!E:66!E C:G WC [cWW][XIX] 10.55 61.23; 51.31 9.93 -4.14 0.02 10.45
HP_ribozyme 1M5V 18!E:65!E A:U WC [cWW][XX] 10.23 60.0; 61.35 1.35 -3.38 0.11 6.13
HP_ribozyme 1M5V 19!E:64!E G:C WC [cWW][XIX] 10.56 54.6; 58.62 4.02 -2.49 0.18 14.05
HP_ribozyme 1M5V 20!E:63!E A:C Wb* [cWW][-] 10.57 73.63; 45.7 27.93 -1.82 0.31 15.82
HP_ribozyme 1M5V 21!E:62!E G:A S [tSH][XI] 9.58 99.43; 3.53 95.9 80.75 0.0 8.89
HP_ribozyme 1M5V 22!E:60!E A:U rH_1 [tWH][XXIV] 9.42 25.5; 33.93 8.43 -166.69 0.2 10.24
HP_ribozyme 1M5V 23!E:61!E A:U WC [cWW][XX] 9.99 47.73; 60.53 12.8 33.14 1.89 75.04
HP_ribozyme 1M5V 23!E:59!E A:A rH [tWH][V] 12.38 14.74; 21.53 6.79 178.71 0.15 15.61
HP_ribozyme 1M5V 24!E:57!E A:A rpS* [---][-] 12.04 1.35; 50.54 49.19 64.08 0.47 13.02
HP_ribozyme 1M5V 26!E:55!E A:G WC [cWW][VIII] 12.91 42.08; 48.74 6.66 -8.12 0.04 21.58
HP_ribozyme 1M5V 27!E:54!E C:G WC [cWW][XIX] 10.71 57.48; 54.24 3.24 -12.12 0.45 25.21
HP_ribozyme 1M5V 28!E:53!E A:U WC [cWW][XX] 10.26 57.09; 57.14 0.04 -7.25 0.07 9.64
HP_ribozyme 1M5V 29!E:52!E C:G WC [cWW][XIX] 10.6 55.71; 55.52 0.18 -10.46 0.19 19.25
HP_ribozyme 1M5V 30!E:51!E C:G WC [cWW][XIX] 10.62 56.23; 56.58 0.35 -8.04 0.06 16.28
HP_ribozyme 1M5V 31!E:50!E A:U WC [cWW][XX] 10.58 55.1; 55.54 0.45 -7.86 0.05 13.36
HP_ribozyme 1M5V 32!E:49!E A:U WC [cWW][XX] 10.52 54.08; 55.39 1.31 -9.23 0.52 20.7
HP_ribozyme 1M5V 33!E:48!E C:G WC [cWW][XIX] 10.46 59.1; 56.73 2.37 -8.66 0.46 25.7
HP_ribozyme 1M5V 34!E:47!E C:G WC [cWW][XIX] 10.7 56.27; 54.66 1.62 -3.73 0.02 8.71
HP_ribozyme 1M5V 35!E:46!E C:G WC [cWW][XIX] 10.79 55.3; 55.24 0.07 -0.06 0.1 3.24
HP_ribozyme 1M5V 43!E:45!E U:C S(sp:O2*-O2P) [---][-] 9.5 123.8; 55.57 68.23 -161.01 1.6 45.32
HP_ribozyme 1M5V 69!E:84!E A:U Wb [---][-] 10.61 47.27; 64.16 16.89 -19.34 0.03 24.12
HP_ribozyme 1M5V 70!E:83!E C:G WC [cWW][XIX] 10.59 49.7; 60.93 11.23 -14.05 0.17 20.98
HP_ribozyme 1M5V 71!E:82!E G:C WC [cWW][XIX] 11.37 48.49; 48.6 0.11 -15.84 0.19 19.26
HP_ribozyme 1M5V 72!E:81!E G:U WC [---][-] 10.16 47.56; 58.55 10.99 5.4 0.13 8.93
HP_ribozyme 1M5V 73!E:80!E G:U WC [---][-] 10.15 62.34; 65.51 3.16 -6.19 0.73 14.9
HP_ribozyme 1M5V 74!E:79!E G:C Wb [---][-] 9.99 52.09; 79.59 27.51 -15.23 0.28 17.13
HP_ribozyme 1M5V 75!E:78!E G:A S [tSH][XI] 9.2 94.52; 14.26 80.26 -115.99 0.96 32.9
HP_ribozyme 1M5V 75!E:77!E G:A S(sb:O2*-N7) [---][-] 7.36 93.26; 35.4 57.85 -165.2 2.47 40.36