Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1MFQ BPC Identified: 65 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
SRP_RNA 1MFQ 112!A:239!A G:C WC [cWW][XIX] 10.53 47.43; 57.08 9.65 -8.6 0.57 14.13
SRP_RNA 1MFQ 113!A:238!A A:U WC [cWW][XX] 10.47 50.6; 56.12 5.53 -12.8 0.14 15.3
SRP_RNA 1MFQ 114!A:237!A C:G WC [cWW][XIX] 10.74 46.93; 58.57 11.64 -12.71 0.55 11.05
SRP_RNA 1MFQ 115!A:236!A A:U WC [cWW][XX] 10.41 56.62; 50.81 5.81 -17.71 0.15 29.05
SRP_RNA 1MFQ 116!A:235!A C:G Wb [---][-] 10.68 62.07; 44.72 17.35 -10.41 0.33 14.61
SRP_RNA 1MFQ 117!A:234!A U:A WC [cWW][XX] 10.46 55.26; 43.98 11.29 -11.21 0.26 17.97
SRP_RNA 1MFQ 119!A:231!A A:A WC [---][-] 10.93 79.06; 69.73 9.33 -12.38 0.83 24.08
SRP_RNA 1MFQ 120!A:230!A G:C WC [cWW][XIX] 9.68 58.87; 71.57 12.7 -9.47 0.43 18.83
SRP_RNA 1MFQ 121!A:229!A U:U Wb [cWW][XVI] 8.63 51.93; 76.37 24.44 -13.62 0.51 19.3
SRP_RNA 1MFQ 122!A:228!A U:A WC [cWW][XX] 10.02 61.22; 67.89 6.67 -11.75 0.23 17.0
SRP_RNA 1MFQ 123!A:227!A C:G WC [cWW][XIX] 11.47 53.89; 43.39 10.5 -11.07 0.09 21.09
SRP_RNA 1MFQ 124!A:226!A G:U Wb [cWW][XXVIII] 10.1 41.46; 81.12 39.67 -6.69 0.06 11.02
SRP_RNA 1MFQ 125!A:225!A G:C WC [cWW][XIX] 10.86 58.7; 44.72 13.97 -1.3 0.54 17.75
SRP_RNA 1MFQ 126!A:224!A C:G WC [cWW][XIX] 10.26 63.03; 51.9 11.13 -10.51 0.08 13.84
SRP_RNA 1MFQ 127!A:223!A A:U WC [cWW][XX] 10.81 55.78; 52.43 3.35 -17.14 0.69 28.22
SRP_RNA 1MFQ 127!A:173!A A:A rS(sb:O2*-N1)_1 [tSS][-] 8.77 94.46; 55.63 38.83 139.67 0.55 39.4
SRP_RNA 1MFQ 128!A:222!A U:G Wb [cWW][XXVIII] 10.7 56.48; 37.43 19.06 -15.12 0.08 18.86
SRP_RNA 1MFQ 129!A:168!A C:G WC [cWW][XIX] 11.35 41.75; 46.24 4.49 -44.73 0.22 52.28
SRP_RNA 1MFQ 130!A:167!A A:U WC [cWW][XX] 10.23 57.57; 60.71 3.14 -33.11 0.18 41.55
SRP_RNA 1MFQ 131!A:166!A A:U Wb* [---][-] 11.1 60.43; 40.23 20.2 -7.98 0.51 35.6
SRP_RNA 1MFQ 132!A:165!A U:G Wb [cWW][XXVIII] 10.65 59.62; 49.14 10.48 -6.01 0.43 7.3
SRP_RNA 1MFQ 133!A:164!A A:G Wb [---][-] 12.86 41.81; 66.84 25.03 -9.46 0.43 16.71
SRP_RNA 1MFQ 134!A:163!A U:A WC [cWW][XX] 10.83 56.46; 63.63 7.17 -16.64 0.3 19.88
SRP_RNA 1MFQ 135!A:162!A G:C WC [cWW][XIX] 10.64 48.91; 57.09 8.19 -9.09 0.3 7.96
SRP_RNA 1MFQ 136!A:214!A G:A rS [tSS][-] 8.32 85.72; 57.02 28.7 151.36 1.19 27.13
SRP_RNA 1MFQ 136!A:161!A G:C WC [cWW][XIX] 10.37 53.16; 54.51 1.35 -10.28 0.21 19.49
SRP_RNA 1MFQ 137!A:160!A U:A WC [cWW][XX] 10.32 54.51; 56.79 2.29 -5.16 0.21 11.63
SRP_RNA 1MFQ 138!A:159!A G:C WC [cWW][XIX] 10.4 54.76; 56.72 1.96 -4.38 0.54 5.96
SRP_RNA 1MFQ 139!A:158!A A:C WC [---][-] 10.44 58.67; 60.09 1.42 -7.29 0.91 3.91
SRP_RNA 1MFQ 140!A:157!A C:A Wb [cWW][-] 10.11 72.22; 56.45 15.77 -2.21 0.21 11.83
SRP_RNA 1MFQ 141!A:156!A C:G Wb [---][-] 10.8 60.96; 48.28 12.68 -4.71 0.33 11.21
SRP_RNA 1MFQ 142!A:155!A U:G Wb [cWW][XXVIII] 10.1 70.01; 46.06 23.96 3.46 0.39 6.57
SRP_RNA 1MFQ 143!A:154!A C:G WC [cWW][XIX] 10.56 55.69; 59.88 4.18 -3.41 0.31 12.01
SRP_RNA 1MFQ 144!A:153!A C:G WC [cWW][XIX] 10.57 49.64; 59.67 10.03 -1.44 0.35 18.71
SRP_RNA 1MFQ 145!A:152!A C:G WC [cWW][XIX] 10.33 56.11; 55.22 0.9 2.62 0.05 10.11
SRP_RNA 1MFQ 146!A:151!A G:C WC [cWW][XIX] 10.32 59.35; 56.16 3.2 1.33 0.18 18.55
SRP_RNA 1MFQ 149!A:201!A A:A rWb* [tWW][I] 13.83 29.86; 23.71 6.16 160.75 0.52 22.45
SRP_RNA 1MFQ 149!A:197!A A:G pfS(sb:O2*-N3) [---][-] 5.87 96.8; 143.16 46.36 -24.5 1.36 17.59
SRP_RNA 1MFQ 150!A:203!A G:G rS(sb:O2*-N3) [---][-] 5.02 98.09; 100.37 2.28 -136.62 0.21 35.0
SRP_RNA 1MFQ 150!A:202!A G:C rS [tSS][-] 8.8 80.18; 68.8 11.39 -145.63 0.45 31.17
SRP_RNA 1MFQ 150!A:197!A G:G rpS [cSS][-] 4.4 118.99; 101.63 17.36 116.55 0.36 33.29
SRP_RNA 1MFQ 161!A:214!A C:A rpS(bs:O2-O2*) [cSS][-] 5.62 107.46; 143.53 36.07 -39.04 1.23 7.66
SRP_RNA 1MFQ 162!A:213!A C:A rpS(sb:O2*-N3) [cSS][-] 5.99 155.02; 86.43 68.59 -41.82 1.29 39.64
SRP_RNA 1MFQ 173!A:223!A A:U rpS(ss:O2*-O2*)_1 [---][-] 6.76 126.18; 104.61 21.57 -57.6 2.67 11.98
SRP_RNA 1MFQ 175!A:221!A G:C WC [cWW][XIX] 10.69 60.05; 44.73 15.32 -13.51 0.15 16.46
SRP_RNA 1MFQ 177!A:220!A G:C WC [cWW][XIX] 10.6 49.61; 53.54 3.93 -1.23 0.14 3.74
SRP_RNA 1MFQ 178!A:219!A G:C WC [cWW][XIX] 10.51 56.83; 49.21 7.62 -8.24 0.28 11.12
SRP_RNA 1MFQ 179!A:218!A G:U Wb [cWW][XXVIII] 10.51 36.42; 65.97 29.55 -9.4 0.25 8.37
SRP_RNA 1MFQ 180!A:217!A G:C WC [cWW][XIX] 10.39 49.94; 55.87 5.93 -7.55 0.24 10.29
SRP_RNA 1MFQ 181!A:216!A U:A WC [cWW][XX] 10.68 57.77; 48.18 9.59 -7.5 0.15 11.06
SRP_RNA 1MFQ 182!A:215!A G:A S [tSH][XI] 9.95 94.43; 9.99 84.44 -27.99 0.09 8.03
SRP_RNA 1MFQ 187!A:212!A G:C WC [cWW][XIX] 10.54 52.5; 52.52 0.02 -3.63 0.29 7.98
SRP_RNA 1MFQ 188!A:211!A G:U Wb [cWW][XXVIII] 10.26 40.87; 65.57 24.7 -9.52 0.24 17.8
SRP_RNA 1MFQ 189!A:210!A C:G WC [cWW][XIX] 10.88 46.77; 55.26 8.48 -8.8 0.06 14.86
SRP_RNA 1MFQ 190!A:209!A C:G WC [cWW][XIX] 10.61 55.95; 51.46 4.49 0.93 0.03 2.55
SRP_RNA 1MFQ 191!A:208!A C:A S [tSH][-] 9.91 77.42; 2.63 74.79 -18.69 0.93 8.6
SRP_RNA 1MFQ 192!A:207!A A:C rH_1 [rWH][XXV] 10.92 6.5; 23.44 16.94 -160.05 0.23 13.62
SRP_RNA 1MFQ 192!A:206!A A:G S(bp:N1-O2P)_2 [---][-] 12.05 37.0; 60.41 23.42 159.16 2.34 10.33
SRP_RNA 1MFQ 193!A:206!A G:G S_1 [tSH][-] 11.54 4.51; 79.08 74.58 26.7 0.11 12.97
SRP_RNA 1MFQ 194!A:205!A G:A WC [cWW][VIII] 12.76 44.89; 49.74 4.85 -2.29 0.21 16.2
SRP_RNA 1MFQ 195!A:204!A U:G Wb [cWW][XXVIII] 10.52 59.27; 41.07 18.2 -11.2 0.69 16.73
SRP_RNA 1MFQ 196!A:203!A C:G WC [cWW][XIX] 10.45 51.36; 50.55 0.81 -7.7 0.1 9.0
SRP_RNA 1MFQ 197!A:202!A G:C WC [cWW][XIX] 10.49 55.26; 47.89 7.37 3.96 0.27 8.2
SRP_RNA 1MFQ 198!A:201!A G:A S [tSH][XI] 8.91 95.39; 13.79 81.61 -81.85 0.26 25.05
SRP_RNA 1MFQ 198!A:200!A G:A S(sb:O2*-N7) [---][-] 7.52 87.03; 36.34 50.69 -167.23 2.67 35.3