Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1MHK
BPC Identified: 11
Ambiguities: 0
| rRNA |
1MHK |
1!S:14!L |
C:G |
WC [cWW][XIX] |
10.68 |
56.23; 55.79 |
0.45 |
-2.27 |
0.02 |
5.77 |
| rRNA |
1MHK |
2!S:13!L |
C:G |
WC [cWW][XIX] |
10.84 |
55.24; 53.05 |
2.19 |
-9.87 |
0.13 |
10.93 |
| rRNA |
1MHK |
3!S:12!L |
A:U |
WC [cWW][XX] |
10.58 |
57.64; 54.31 |
3.33 |
-10.32 |
0.1 |
17.4 |
| rRNA |
1MHK |
4!S:11!L |
U:G |
Wb [cWW][XXVIII] |
10.45 |
66.56; 41.68 |
24.89 |
-10.13 |
0.51 |
13.6 |
| rRNA |
1MHK |
5!S:10!L |
G:U |
Wb [cWW][XXVIII] |
10.6 |
39.74; 67.72 |
27.98 |
-3.43 |
0.2 |
9.43 |
| rRNA |
1MHK |
6!S:9!L |
C:G |
WC [cWW][XIX] |
10.68 |
52.9; 52.71 |
0.19 |
-9.22 |
0.13 |
12.76 |
| rRNA |
1MHK |
7!S:8!L |
G:A |
S [tSH][XI] |
9.3 |
96.97; 8.51 |
88.46 |
-43.48 |
0.63 |
16.67 |
| rRNA |
1MHK |
7!S:7!L |
G:U |
S*(pb:O2P-N1) [---][-] |
9.31 |
69.12; 14.15 |
54.97 |
115.31 |
2.35 |
19.12 |
| rRNA |
1MHK |
8!S:7!L |
A:U |
rH_1 [tWH][XXIV] |
10.08 |
31.86; 26.39 |
5.47 |
-172.96 |
0.24 |
6.18 |
| rRNA |
1MHK |
8!S:6!L |
A:C |
rH(bp:N4-O2P)_2 [---][-] |
11.79 |
61.26; 43.5 |
17.76 |
-173.18 |
0.75 |
24.35 |
| rRNA |
1MHK |
9!S:9!L |
A:G |
rS [tSS][-] |
7.94 |
48.89; 91.17 |
42.29 |
-175.62 |
0.36 |
49.63 |