Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1MJ1 BPC Identified: 64 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1MJ1 1!D:72!D G:C WC [cWW][XIX] 10.51 49.91; 61.35 11.44 1.73 0.35 8.67
tRNA 1MJ1 2!D:71!D C:G WC [cWW][XIX] 10.65 55.5; 54.3 1.2 0.08 0.43 7.33
tRNA 1MJ1 3!D:70!D G:C WC [cWW][XIX] 10.63 62.22; 53.43 8.79 -3.59 0.17 10.53
tRNA 1MJ1 4!D:69!D G:U Wb [cWW][XXVIII] 10.45 42.35; 69.57 27.22 -3.95 0.22 16.02
tRNA 1MJ1 5!D:68!D A:U WC [cWW][XX] 10.65 53.59; 55.84 2.24 -0.45 0.48 12.28
tRNA 1MJ1 6!D:67!D U:A WC [cWW][XX] 10.48 56.78; 53.82 2.96 -8.29 0.09 18.74
tRNA 1MJ1 7!D:66!D U:A WC [cWW][XX] 10.87 54.61; 52.41 2.2 0.17 0.14 5.14
tRNA 1MJ1 8!D:14!D U:A rH_1 [tWH][XXIV] 9.32 30.3; 27.77 2.53 163.56 0.45 11.36
tRNA 1MJ1 9!D:23!D A:A rS* [tHH][-] 11.05 14.23; 11.42 2.81 123.56 0.23 15.71
tRNA 1MJ1 10!D:25!D G:C WC [cWW][XIX] 10.69 50.44; 58.89 8.45 -4.52 0.39 17.73
tRNA 1MJ1 11!D:24!D C:G WC [cWW][XIX] 10.65 48.07; 55.19 7.13 -19.53 0.0 24.81
tRNA 1MJ1 12!D:23!D U:A WC [cWW][XX] 11.19 48.3; 50.88 2.58 -5.5 0.04 6.54
tRNA 1MJ1 13!D:22!D C:G WC [cWW][XIX] 10.83 49.01; 53.74 4.73 -13.0 0.2 14.23
tRNA 1MJ1 15!D:48!D G:C rWb [tWW][XXII] 10.09 38.0; 69.7 31.7 -178.13 0.13 3.07
tRNA 1MJ1 18!D:55!D G:U fS_PSU [---][-] 8.52 32.23; 131.28 99.05 -128.94 0.48 18.55
tRNA 1MJ1 19!D:56!D G:C WC [cWW][XIX] 10.18 54.37; 52.73 1.64 -25.3 0.73 38.59
tRNA 1MJ1 22!D:46!D G:G rH_1 [tWH][VII] 10.84 32.49; 29.55 2.93 -174.1 0.23 5.51
tRNA 1MJ1 26!D:44!D G:A rWb* [---][-] 12.53 43.5; 46.61 3.12 -8.94 0.18 36.39
tRNA 1MJ1 27!D:43!D C:G WC [cWW][XIX] 10.72 47.23; 54.0 6.77 -14.85 0.07 20.72
tRNA 1MJ1 28!D:42!D C:G WC [cWW][XIX] 10.75 52.9; 49.42 3.48 -11.07 0.04 14.47
tRNA 1MJ1 29!D:41!D A:U WC [cWW][XX] 10.4 53.94; 58.5 4.56 -1.11 0.11 8.41
tRNA 1MJ1 30!D:40!D G:C WC [cWW][XIX] 10.9 53.56; 51.22 2.33 -10.48 0.13 20.62
tRNA 1MJ1 31!D:39!D A:U Wb*_PSU [---][-] 10.87 62.92; 58.43 4.48 -12.31 0.43 18.91
tRNA 1MJ1 33!D:35!D U:A S(sb:O2*-N7) [---][-] 6.65 90.99; 35.24 55.75 175.13 1.08 28.22
tRNA 1MJ1 47!D:50!D U:U rpS(ps:O1P-O2*) [---][-] 8.99 62.38; 110.58 48.2 148.63 1.87 47.24
tRNA 1MJ1 49!D:65!D C:G WC [cWW][XIX] 10.99 50.54; 55.57 5.03 -9.6 0.4 15.67
tRNA 1MJ1 50!D:64!D U:A WC [cWW][XX] 10.54 55.58; 55.26 0.32 -10.25 0.33 9.7
tRNA 1MJ1 51!D:63!D G:C WC [cWW][XIX] 10.22 51.5; 59.24 7.74 -12.59 0.03 16.69
tRNA 1MJ1 52!D:62!D U:A WC [cWW][XX] 10.75 54.77; 52.98 1.79 -8.02 0.16 11.71
tRNA 1MJ1 53!D:61!D G:C WC [cWW][XIX] 10.46 54.99; 53.88 1.11 -7.68 1.05 25.37
tRNA 1MJ1 54!D:58!D U:A rH_1 [tWH][XXIV] 10.02 22.81; 21.37 1.45 174.27 0.0 5.02
tRNA 1MJ1 2!C:71!C C:G WC [cWW][XIX] 10.46 53.64; 57.51 3.87 -4.24 0.23 10.89
tRNA 1MJ1 3!C:70!C G:C WC [cWW][XIX] 10.75 53.0; 53.85 0.85 -7.66 0.29 10.59
tRNA 1MJ1 4!C:69!C G:U Wb [cWW][XXVIII] 10.44 42.7; 68.48 25.78 -7.69 0.26 10.4
tRNA 1MJ1 5!C:68!C A:U WC [cWW][XX] 10.25 57.47; 58.23 0.76 -15.37 0.17 20.88
tRNA 1MJ1 6!C:67!C U:A WC [cWW][XX] 10.15 56.85; 59.63 2.78 -15.52 0.38 22.32
tRNA 1MJ1 7!C:66!C U:A WC [cWW][XX] 10.39 55.52; 53.78 1.73 -1.72 0.1 3.98
tRNA 1MJ1 8!C:21!C U:A fS(sb:O2*-N1) [tSW][-] 8.61 112.07; 48.82 63.26 156.75 0.2 18.36
tRNA 1MJ1 8!C:14!C U:A rH_1 [tWH][XXIV] 9.65 29.67; 19.72 9.95 177.76 0.45 11.93
tRNA 1MJ1 9!C:23!C A:A rS* [tHH][-] 10.9 14.6; 10.63 3.97 130.61 0.39 11.76
tRNA 1MJ1 10!C:45!C G:G pS_1 [cSH][-] 8.62 39.43; 126.95 87.52 -2.76 0.37 25.96
tRNA 1MJ1 10!C:25!C G:C WC [cWW][XIX] 10.46 52.76; 55.64 2.88 -6.77 0.25 10.14
tRNA 1MJ1 11!C:24!C C:G WC [cWW][XIX] 10.35 56.37; 56.19 0.18 -9.26 0.18 19.99
tRNA 1MJ1 12!C:23!C U:A WC [cWW][XX] 10.67 53.51; 52.54 0.97 -8.2 0.11 11.29
tRNA 1MJ1 13!C:22!C C:G WC [cWW][XIX] 10.63 55.19; 54.59 0.6 -4.12 0.08 4.49
tRNA 1MJ1 15!C:48!C G:C rWb [tWW][XXII] 10.43 37.38; 60.98 23.6 -177.16 0.03 1.78
tRNA 1MJ1 18!C:55!C G:U fS_PSU [---][-] 8.62 31.41; 128.64 97.23 -124.34 0.27 15.85
tRNA 1MJ1 19!C:56!C G:C WC [cWW][XIX] 10.45 57.74; 54.49 3.26 -27.17 1.14 35.7
tRNA 1MJ1 22!C:46!C G:G rH_1 [tWH][VII] 11.22 31.21; 29.01 2.19 -176.04 0.19 7.08
tRNA 1MJ1 26!C:44!C G:A WC [cWW][VIII] 12.59 42.26; 49.65 7.39 -25.84 0.11 41.61
tRNA 1MJ1 27!C:43!C C:G WC [cWW][XIX] 10.6 51.87; 52.4 0.53 -17.64 0.25 22.01
tRNA 1MJ1 28!C:42!C C:G WC [cWW][XIX] 10.45 53.63; 55.87 2.23 -11.2 0.24 11.03
tRNA 1MJ1 29!C:41!C A:U WC [cWW][XX] 10.07 61.9; 62.76 0.87 -6.99 0.03 10.03
tRNA 1MJ1 30!C:40!C G:C WC [cWW][XIX] 10.71 57.25; 48.52 8.73 -10.68 0.08 15.07
tRNA 1MJ1 31!C:39!C A:U Wb*_PSU [---][-] 10.92 64.68; 59.55 5.13 -9.53 0.26 15.97
tRNA 1MJ1 32!C:38!C C:A sWb [---][-] 10.87 89.76; 19.48 70.28 -9.86 0.84 5.18
tRNA 1MJ1 47!C:50!C U:U rpS(ps:O1P-O2*) [---][-] 8.83 81.23; 110.32 29.09 155.66 1.17 40.49
tRNA 1MJ1 49!C:65!C C:G WC [cWW][XIX] 10.65 52.46; 55.34 2.88 -2.8 0.01 7.22
tRNA 1MJ1 50!C:64!C U:A WC [cWW][XX] 10.45 54.31; 56.11 1.79 -6.64 0.13 8.27
tRNA 1MJ1 51!C:63!C G:C WC [cWW][XIX] 10.46 55.93; 56.9 0.97 -5.47 0.15 13.34
tRNA 1MJ1 52!C:62!C U:A WC [cWW][XX] 10.55 52.27; 57.51 5.24 -7.94 0.14 7.17
tRNA 1MJ1 53!C:61!C G:C WC [cWW][XIX] 10.55 53.91; 55.75 1.84 -3.0 0.44 12.32
tRNA 1MJ1 54!C:58!C U:A rH_1 [tWH][XXIV] 9.78 31.79; 23.33 8.45 173.22 0.02 2.62
tRNA 1MJ1 55!C:57!C U:G S_PSU(sb:O2*-N7) [---][-] 6.71 93.02; 39.67 53.35 -178.25 2.02 22.57