Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1MJI BPC Identified: 32 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
rRNA 1MJI 26!C:58!C G:C WC [cWW][XIX] 10.82 52.41; 53.17 0.76 -0.59 0.27 8.78
rRNA 1MJI 27!C:57!C G:C WC [cWW][XIX] 10.71 52.82; 56.21 3.4 -8.81 0.08 9.55
rRNA 1MJI 28!C:56!C C:G WC [cWW][XIX] 10.88 50.56; 53.22 2.66 -2.41 0.67 15.25
rRNA 1MJI 29!C:55!C A:U WC [cWW][XX] 10.37 55.5; 56.87 1.37 1.74 0.09 5.46
rRNA 1MJI 30!C:54!C C:G WC [cWW][XIX] 10.51 57.37; 55.2 2.17 -3.26 0.67 14.6
rRNA 1MJI 31!C:51!C C:G WC [cWW][XIX] 10.49 55.77; 56.14 0.38 -13.23 0.03 18.96
rRNA 1MJI 32!C:50!C U:A WC [cWW][XX] 10.29 58.51; 56.36 2.14 -13.78 0.13 14.91
rRNA 1MJI 33!C:49!C G:C WC [cWW][XIX] 10.63 54.28; 55.07 0.79 -20.42 0.07 20.43
rRNA 1MJI 34!C:48!C A:U WC [cWW][XX] 10.4 56.16; 58.09 1.93 -15.98 0.14 18.51
rRNA 1MJI 36!C:49!C C:C pfS [cSW][-] 7.0 38.14; 152.9 114.76 -15.42 0.16 31.03
rRNA 1MJI 37!C:48!C C:U pfS [cSW][-] 7.73 44.0; 133.73 89.74 -19.82 1.06 21.13
rRNA 1MJI 38!C:44!C C:G WC [cWW][XIX] 10.5 53.47; 58.57 5.1 -9.49 0.16 13.01
rRNA 1MJI 39!C:46!C A:A pfS [cSW][-] 8.98 131.56; 41.95 89.62 -2.58 0.06 26.32
rRNA 1MJI 40!C:45!C U:A S [tSH][-] 9.19 109.37; 10.96 98.41 14.32 0.45 22.97
rRNA 1MJI 40!C:41!C U:G rS(sp:O2*-O1P) [---][-] 8.87 131.1; 109.51 21.59 -108.88 1.19 32.89
rRNA 1MJI 44!C:47!C G:C fS*_1 [tWS][-] 8.92 108.52; 11.18 97.34 120.14 0.25 31.31
rRNA 1MJI 26!D:58!D G:C WC [cWW][XIX] 10.61 54.79; 54.59 0.2 -7.82 0.04 11.13
rRNA 1MJI 27!D:57!D G:C WC [cWW][XIX] 10.63 53.18; 56.7 3.52 -6.93 0.0 5.75
rRNA 1MJI 28!D:56!D C:G WC [cWW][XIX] 10.64 53.63; 55.21 1.58 -7.21 0.02 10.88
rRNA 1MJI 29!D:55!D A:U WC [cWW][XX] 10.48 54.77; 56.59 1.81 4.61 0.11 2.31
rRNA 1MJI 30!D:54!D C:G WC [cWW][XIX] 10.5 57.63; 55.41 2.22 -2.04 0.3 7.77
rRNA 1MJI 31!D:51!D C:G WC [cWW][XIX] 10.52 55.2; 54.6 0.6 -15.7 0.15 18.34
rRNA 1MJI 32!D:50!D U:A WC [cWW][XX] 10.36 56.65; 58.6 1.95 -10.44 0.12 14.22
rRNA 1MJI 33!D:49!D G:C WC [cWW][XIX] 10.72 54.44; 53.65 0.78 -17.68 0.11 20.38
rRNA 1MJI 34!D:48!D A:U WC [cWW][XX] 10.48 57.36; 53.98 3.38 -12.47 0.0 16.44
rRNA 1MJI 34!D:36!D A:C pS* [cHS][-] 8.69 125.59; 16.41 109.18 -22.03 1.12 56.23
rRNA 1MJI 36!D:49!D C:C pfS [cSW][-] 7.5 42.6; 145.04 102.44 -13.04 0.26 51.33
rRNA 1MJI 37!D:48!D C:U pfS [cSW][-] 7.41 44.61; 134.6 89.99 -16.08 0.83 15.23
rRNA 1MJI 38!D:44!D C:G WC [cWW][XIX] 10.54 50.66; 57.07 6.4 -11.76 0.34 10.61
rRNA 1MJI 39!D:46!D A:A pfS [cSW][-] 8.82 131.69; 42.55 89.15 -4.17 0.18 25.84
rRNA 1MJI 40!D:45!D U:A S [tSH][-] 9.05 110.13; 10.36 99.77 1.18 0.02 15.94
rRNA 1MJI 44!D:47!D G:C fS*_1 [tWS][-] 8.98 105.99; 13.18 92.81 116.05 0.33 28.51