Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1ML5 BPC Identified: 36 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1ML5 2!B:71!B C:G WC [cWW][XIX] 10.47 53.61; 57.53 3.92 -4.28 0.23 10.86
tRNA 1ML5 3!B:70!B G:C WC [cWW][XIX] 10.75 53.03; 53.87 0.84 -7.7 0.29 10.59
tRNA 1ML5 4!B:69!B G:U Wb [cWW][XXVIII] 10.44 42.66; 68.45 25.8 -7.72 0.26 10.38
tRNA 1ML5 5!B:68!B A:U WC [cWW][XX] 10.25 57.45; 58.22 0.77 -15.4 0.17 20.9
tRNA 1ML5 6!B:67!B U:A WC [cWW][XX] 10.15 56.83; 59.61 2.79 -15.53 0.38 22.3
tRNA 1ML5 7!B:66!B U:A WC [cWW][XX] 10.39 55.5; 53.82 1.68 -1.77 0.1 3.95
tRNA 1ML5 8!B:21!B U:A fS(sb:O2*-N1) [tSW][-] 8.61 112.08; 48.82 63.26 156.73 0.2 18.33
tRNA 1ML5 8!B:14!B U:A rH_1 [tWH][XXIV] 9.65 29.67; 19.71 9.97 177.72 0.45 11.96
tRNA 1ML5 9!B:23!B A:A rS* [tHH][-] 10.9 14.54; 10.61 3.93 130.89 0.39 11.77
tRNA 1ML5 10!B:45!B G:G pS_1 [cSH][-] 8.62 39.44; 126.96 87.52 -2.72 0.37 26.0
tRNA 1ML5 10!B:25!B G:C WC [cWW][XIX] 10.46 52.75; 55.65 2.9 -6.75 0.25 10.13
tRNA 1ML5 11!B:24!B C:G WC [cWW][XIX] 10.35 56.36; 56.21 0.15 -9.28 0.18 19.99
tRNA 1ML5 12!B:23!B U:A WC [cWW][XX] 10.67 53.5; 52.54 0.96 -8.3 0.11 11.29
tRNA 1ML5 13!B:22!B C:G WC [cWW][XIX] 10.63 55.16; 54.56 0.6 -4.14 0.08 4.48
tRNA 1ML5 15!B:48!B G:C rWb [tWW][XXII] 10.43 37.45; 60.99 23.54 -177.17 0.03 1.77
tRNA 1ML5 18!B:55!B G:U fS_PSU [---][-] 8.62 31.39; 128.65 97.26 -124.36 0.27 15.87
tRNA 1ML5 19!B:56!B G:C WC [cWW][XIX] 10.45 57.72; 54.47 3.25 -27.19 1.13 35.63
tRNA 1ML5 22!B:46!B G:G rH_1 [tWH][VII] 11.22 31.22; 29.04 2.19 -176.06 0.2 7.11
tRNA 1ML5 26!B:44!B G:A WC [cWW][VIII] 12.59 42.25; 49.66 7.41 -25.75 0.11 41.65
tRNA 1ML5 27!B:43!B C:G WC [cWW][XIX] 10.6 51.85; 52.37 0.52 -17.64 0.25 22.01
tRNA 1ML5 28!B:42!B C:G WC [cWW][XIX] 10.45 53.65; 55.86 2.21 -11.21 0.24 11.02
tRNA 1ML5 29!B:41!B A:U WC [cWW][XX] 10.07 61.86; 62.72 0.86 -6.93 0.03 10.04
tRNA 1ML5 30!B:40!B G:C WC [cWW][XIX] 10.71 57.25; 48.53 8.72 -10.63 0.08 15.09
tRNA 1ML5 31!B:39!B A:U Wb*_PSU [---][-] 10.92 64.7; 59.54 5.16 -9.52 0.26 15.99
tRNA 1ML5 32!B:38!B C:A sWb [---][-] 10.87 89.76; 19.46 70.3 -9.73 0.84 5.19
tRNA 1ML5 34!B:13!C G:U WC [---][-] 11.11 50.29; 49.29 1.0 -12.08 0.13 9.88
tRNA 1ML5 35!B:12!C A:U WC [cWW][XX] 10.84 54.01; 52.71 1.3 -6.69 0.07 8.82
tRNA 1ML5 36!B:11!C A:U WC [cWW][XX] 10.75 54.3; 53.13 1.16 -4.94 0.06 11.3
tRNA 1ML5 47!B:50!B U:U rpS(ps:O1P-O2*) [---][-] 8.83 81.23; 110.31 29.08 155.68 1.17 40.48
tRNA 1ML5 49!B:65!B C:G WC [cWW][XIX] 10.65 52.42; 55.41 2.99 -2.82 0.01 7.22
tRNA 1ML5 50!B:64!B U:A WC [cWW][XX] 10.45 54.32; 56.08 1.76 -6.65 0.13 8.27
tRNA 1ML5 51!B:63!B G:C WC [cWW][XIX] 10.46 55.97; 56.92 0.96 -5.44 0.15 13.34
tRNA 1ML5 52!B:62!B U:A WC [cWW][XX] 10.55 52.32; 57.52 5.21 -8.01 0.15 7.13
tRNA 1ML5 53!B:61!B G:C WC [cWW][XIX] 10.55 53.88; 55.74 1.86 -3.03 0.44 12.32
tRNA 1ML5 54!B:58!B U:A rH_1 [tWH][XXIV] 9.78 31.77; 23.32 8.45 173.13 0.02 2.63
tRNA 1ML5 55!B:57!B U:G S_PSU(sb:O2*-N7) [---][-] 6.72 93.01; 39.66 53.35 -178.24 2.02 22.55