Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1MSY
BPC Identified: 14
Ambiguities: 0
| rRNA |
1MSY |
2648!A:2672!A |
G:U |
Wb [cWW][XXVIII] |
10.44 |
42.15; 68.6 |
26.45 |
-6.63 |
0.03 |
9.74 |
| rRNA |
1MSY |
2649!A:2671!A |
C:G |
WC [cWW][XIX] |
10.62 |
54.09; 56.4 |
2.31 |
-11.7 |
0.34 |
17.8 |
| rRNA |
1MSY |
2650!A:2670!A |
U:A |
WC [cWW][XX] |
10.19 |
59.51; 59.37 |
0.14 |
-13.99 |
0.23 |
17.81 |
| rRNA |
1MSY |
2651!A:2669!A |
C:G |
WC [cWW][XIX] |
10.54 |
57.46; 56.05 |
1.42 |
-11.49 |
0.27 |
18.76 |
| rRNA |
1MSY |
2652!A:2668!A |
C:G |
WC [cWW][XIX] |
10.64 |
57.9; 52.82 |
5.09 |
-7.17 |
0.04 |
12.17 |
| rRNA |
1MSY |
2653!A:2667!A |
U:C |
sWC [---][-] |
10.77 |
80.36; 14.3 |
66.06 |
-9.13 |
0.35 |
11.73 |
| rRNA |
1MSY |
2654!A:2666!A |
A:C |
rS* [tHH][-] |
12.59 |
12.85; 39.3 |
26.45 |
-52.91 |
1.6 |
26.85 |
| rRNA |
1MSY |
2655!A:2665!A |
G:A |
S(bp:N1-O2P)_3 [---][-] |
10.53 |
80.92; 63.15 |
17.77 |
-168.38 |
0.9 |
20.2 |
| rRNA |
1MSY |
2655!A:2656!A |
G:U |
pS* [cHS][-] |
6.81 |
143.29; 50.11 |
93.18 |
7.2 |
0.04 |
2.54 |
| rRNA |
1MSY |
2656!A:2665!A |
U:A |
rH_1 [tWH][XXIV] |
9.6 |
27.92; 24.17 |
3.76 |
-162.67 |
0.83 |
20.42 |
| rRNA |
1MSY |
2657!A:2664!A |
A:G |
S [tSH][XI] |
9.51 |
9.98; 101.28 |
91.3 |
6.25 |
0.1 |
2.55 |
| rRNA |
1MSY |
2658!A:2663!A |
C:G |
WC [cWW][XIX] |
10.55 |
56.86; 57.84 |
0.99 |
1.27 |
0.05 |
5.32 |
| rRNA |
1MSY |
2659!A:2662!A |
G:A |
S [tSH][XI] |
9.25 |
100.18; 10.99 |
89.19 |
-75.55 |
0.07 |
18.46 |
| rRNA |
1MSY |
2659!A:2661!A |
G:A |
S(sb:O2*-N7) [---][-] |
7.68 |
88.97; 32.42 |
56.55 |
167.67 |
1.18 |
30.65 |