Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1MZP
BPC Identified: 29
Ambiguities: 0
| rRNA |
1MZP |
1!B:55!B |
G:C |
WC [cWW][XIX] |
10.44 |
52.4; 62.07 |
9.67 |
-4.22 |
0.74 |
25.68 |
| rRNA |
1MZP |
2!B:54!B |
G:C |
WC [cWW][XIX] |
10.54 |
50.92; 54.4 |
3.48 |
-6.84 |
0.04 |
7.0 |
| rRNA |
1MZP |
3!B:53!B |
G:C |
WC [cWW][XIX] |
10.43 |
52.54; 57.46 |
4.92 |
-3.88 |
0.01 |
6.59 |
| rRNA |
1MZP |
4!B:52!B |
A:U |
WC [cWW][XX] |
9.93 |
59.34; 58.84 |
0.51 |
-12.14 |
0.01 |
18.34 |
| rRNA |
1MZP |
4!B:51!B |
A:U |
WC_mo [cWW][XX] |
12.61 |
40.12; 33.62 |
6.5 |
15.22 |
2.66 |
23.72 |
| rRNA |
1MZP |
5!B:51!B |
U:U |
Wb [cWW][XVI] |
8.42 |
78.45; 46.07 |
32.39 |
-16.51 |
0.13 |
18.06 |
| rRNA |
1MZP |
6!B:50!B |
G:C |
WC [cWW][XIX] |
10.34 |
56.19; 57.15 |
0.97 |
-1.84 |
0.11 |
9.11 |
| rRNA |
1MZP |
8!B:40!B |
G:A |
rS* [tHH][-] |
12.71 |
11.79; 19.61 |
7.81 |
29.68 |
0.54 |
23.72 |
| rRNA |
1MZP |
10!B:38!B |
A:U |
rpS(sb:O2*-N3) [cSS][-] |
5.66 |
93.93; 143.18 |
49.25 |
-48.59 |
1.65 |
8.26 |
| rRNA |
1MZP |
10!B:15!B |
A:A |
rH [tWH][V] |
11.78 |
20.27; 19.82 |
0.45 |
-172.87 |
0.06 |
14.8 |
| rRNA |
1MZP |
11!B:42!B |
G:A |
fS [tSW][X] |
9.73 |
109.23; 12.31 |
96.91 |
-138.73 |
0.58 |
20.37 |
| rRNA |
1MZP |
13!B:43!B |
A:U |
WC [cWW][XX] |
10.61 |
50.61; 57.91 |
7.31 |
-21.55 |
0.09 |
11.58 |
| rRNA |
1MZP |
15!B:39!B |
A:G |
fS [tSW][X] |
9.64 |
13.66; 111.38 |
97.72 |
-106.94 |
0.1 |
23.61 |
| rRNA |
1MZP |
16!B:49!B |
G:C |
WC [cWW][XIX] |
10.65 |
53.95; 56.17 |
2.22 |
-7.14 |
0.25 |
10.22 |
| rRNA |
1MZP |
17!B:48!B |
G:C |
WC [cWW][XIX] |
10.44 |
55.95; 54.7 |
1.25 |
-6.04 |
0.59 |
17.68 |
| rRNA |
1MZP |
18!B:47!B |
U:A |
WC [cWW][XX] |
10.36 |
56.27; 57.29 |
1.01 |
-10.09 |
0.03 |
11.67 |
| rRNA |
1MZP |
19!B:46!B |
G:C |
WC [cWW][XIX] |
10.47 |
54.35; 57.64 |
3.29 |
-11.09 |
0.04 |
10.43 |
| rRNA |
1MZP |
20!B:45!B |
G:C |
WC [cWW][XIX] |
10.34 |
58.04; 55.22 |
2.83 |
-12.17 |
0.15 |
20.11 |
| rRNA |
1MZP |
21!B:44!B |
G:A |
S [tSH][XI] |
9.46 |
95.97; 3.14 |
92.83 |
-26.76 |
0.52 |
13.43 |
| rRNA |
1MZP |
22!B:33!B |
A:G |
rS [tSS][-] |
8.31 |
59.27; 92.25 |
32.98 |
132.6 |
1.13 |
51.19 |
| rRNA |
1MZP |
23!B:44!B |
G:A |
rS [tSS][-] |
7.85 |
84.95; 56.49 |
28.46 |
-152.45 |
1.7 |
57.88 |
| rRNA |
1MZP |
23!B:32!B |
G:C |
WC [cWW][XIX] |
10.32 |
54.95; 62.75 |
7.79 |
3.59 |
0.1 |
11.93 |
| rRNA |
1MZP |
24!B:31!B |
C:G |
WC [cWW][XIX] |
10.53 |
56.31; 54.4 |
1.91 |
-0.44 |
0.06 |
10.67 |
| rRNA |
1MZP |
25!B:30!B |
C:G |
WC [cWW][XIX] |
10.56 |
57.66; 52.77 |
4.89 |
9.32 |
0.05 |
9.08 |
| rRNA |
1MZP |
26!B:29!B |
G:A |
S [tSH][XI] |
8.96 |
99.26; 12.95 |
86.31 |
-80.95 |
0.82 |
17.99 |
| rRNA |
1MZP |
26!B:28!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.21 |
93.11; 29.01 |
64.1 |
-163.67 |
1.91 |
31.95 |
| rRNA |
1MZP |
37!B:43!B |
G:U |
rH*_2 [---][-] |
12.81 |
41.61; 15.29 |
26.31 |
145.86 |
0.21 |
15.54 |
| rRNA |
1MZP |
38!B:42!B |
U:A |
rH_1 [tWH][XXIV] |
9.7 |
38.39; 12.96 |
25.43 |
-167.63 |
0.1 |
15.54 |
| rRNA |
1MZP |
39!B:41!B |
G:A |
S(sb:O2*-N7) [---][-] |
6.96 |
86.38; 29.08 |
57.3 |
-161.11 |
1.24 |
30.75 |