Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1N78 BPC Identified: 69 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1N78 501!C:572!C G:C WC [cWW][XIX] 10.75 50.6; 50.78 0.18 -15.02 0.18 17.28
tRNA 1N78 502!C:571!C G:U Wb [cWW][XXVIII] 10.42 41.48; 68.77 27.29 -9.72 0.13 14.42
tRNA 1N78 503!C:570!C C:G WC [cWW][XIX] 10.73 52.71; 52.46 0.25 -9.89 0.17 14.78
tRNA 1N78 504!C:569!C C:G WC [cWW][XIX] 10.59 56.49; 56.99 0.5 -1.81 0.23 10.18
tRNA 1N78 505!C:568!C C:G WC [cWW][XIX] 10.81 51.91; 52.71 0.81 1.32 0.21 3.66
tRNA 1N78 506!C:567!C C:G WC [cWW][XIX] 10.48 56.91; 53.89 3.01 -6.69 0.14 9.99
tRNA 1N78 507!C:566!C A:U WC [cWW][XX] 10.81 57.54; 48.73 8.81 -2.61 0.1 5.6
tRNA 1N78 508!C:521!C U:A fS(sb:O2*-N1) [tSW][-] 8.2 95.48; 60.13 35.36 157.66 0.14 28.51
tRNA 1N78 508!C:514!C U:A rH_1 [tWH][XXIV] 9.63 32.68; 18.07 14.61 153.49 1.04 26.57
tRNA 1N78 509!C:523!C C:G rS*_1 [tHH][-] 11.81 13.25; 7.9 5.35 128.84 0.66 13.31
tRNA 1N78 510!C:525!C G:C WC [cWW][XIX] 10.66 52.08; 54.38 2.3 -0.92 0.11 5.26
tRNA 1N78 511!C:524!C U:A WC [cWW][XX] 10.2 56.91; 60.35 3.44 -4.9 0.07 9.58
tRNA 1N78 512!C:523!C C:G WC [cWW][XIX] 10.64 54.73; 53.58 1.16 -0.53 0.24 6.2
tRNA 1N78 513!C:522!C U:G Wb [cWW][XXVIII] 10.26 71.85; 44.74 27.11 1.52 0.19 9.29
tRNA 1N78 514!C:521!C A:A pfS [cSW][-] 9.41 34.15; 123.41 89.26 -8.62 0.19 8.95
tRNA 1N78 515!C:548!C G:C rWb [tWW][XXII] 10.72 41.56; 56.37 14.81 -169.15 0.24 6.82
tRNA 1N78 518!C:555!C G:U fS_1 [tSW][-] 8.69 29.42; 108.94 79.52 -131.54 0.17 25.42
tRNA 1N78 519!C:556!C G:C WC [cWW][XIX] 10.51 57.72; 51.53 6.19 -20.71 0.98 44.14
tRNA 1N78 520!C:548!C U:C rH* [---][-] 13.03 6.62; 14.54 7.92 96.47 0.84 29.9
tRNA 1N78 522!C:546!C G:A rH*_1 [tHW][-] 12.17 17.09; 22.88 5.79 -178.48 0.29 13.56
tRNA 1N78 526!C:544!C G:A WC [cWW][VIII] 12.64 46.71; 49.92 3.2 -15.49 0.5 30.11
tRNA 1N78 527!C:543!C C:G WC [cWW][XIX] 10.53 54.0; 55.58 1.58 -16.55 0.9 29.24
tRNA 1N78 528!C:542!C G:C WC [cWW][XIX] 10.44 53.71; 57.11 3.4 -5.32 0.01 10.27
tRNA 1N78 529!C:541!C G:C WC [cWW][XIX] 10.29 55.96; 56.78 0.82 -2.39 0.12 10.8
tRNA 1N78 530!C:540!C C:G WC [cWW][XIX] 10.41 61.69; 52.56 9.14 -6.7 0.04 8.71
tRNA 1N78 531!C:539!C C:G WC [cWW][XIX] 10.47 58.53; 54.59 3.94 -9.5 0.23 16.15
tRNA 1N78 532!C:538!C C:A sWb [---][-] 10.91 81.66; 29.7 51.95 -6.01 0.46 15.81
tRNA 1N78 549!C:565!C G:C WC [cWW][XIX] 10.63 53.01; 58.5 5.48 -4.49 0.18 10.03
tRNA 1N78 550!C:564!C G:C WC [cWW][XIX] 10.76 52.42; 52.27 0.15 0.2 0.21 11.66
tRNA 1N78 551!C:563!C G:C WC [cWW][XIX] 10.34 55.64; 60.02 4.38 3.81 0.02 5.6
tRNA 1N78 552!C:562!C G:C WC [cWW][XIX] 10.53 53.27; 55.55 2.28 -1.12 0.04 5.6
tRNA 1N78 553!C:561!C G:C WC [cWW][XIX] 10.61 46.35; 54.66 8.31 -5.77 0.52 12.45
tRNA 1N78 554!C:558!C U:A rH_1 [tWH][XXIV] 10.13 31.06; 20.46 10.6 -146.45 0.69 11.23
tRNA 1N78 501!D:572!D G:C WC [cWW][XIX] 10.71 51.02; 52.82 1.8 -17.01 0.19 19.24
tRNA 1N78 502!D:571!D G:U Wb [cWW][XXVIII] 10.45 43.48; 67.47 23.99 -8.02 0.19 12.15
tRNA 1N78 503!D:570!D C:G WC [cWW][XIX] 10.59 54.38; 55.56 1.18 -9.79 0.68 21.09
tRNA 1N78 504!D:569!D C:G WC [cWW][XIX] 10.49 58.39; 55.54 2.85 -3.05 0.09 10.56
tRNA 1N78 505!D:568!D C:G WC [cWW][XIX] 10.73 53.19; 52.39 0.8 -3.65 0.25 4.2
tRNA 1N78 506!D:567!D C:G WC [cWW][XIX] 10.51 57.83; 52.86 4.97 -6.27 0.1 10.08
tRNA 1N78 507!D:566!D A:U WC [cWW][XX] 10.72 56.53; 47.89 8.65 -5.51 0.33 11.04
tRNA 1N78 508!D:546!D U:A rpS(sb:O2*-N3) [cSS][-] 5.58 124.25; 85.85 38.4 -66.7 2.54 17.12
tRNA 1N78 508!D:521!D U:A fS(sb:O2*-N1) [tSW][-] 8.22 96.78; 60.12 36.66 160.36 0.16 25.95
tRNA 1N78 508!D:514!D U:A rH_1 [tWH][XXIV] 9.61 33.22; 17.32 15.9 163.02 0.75 22.69
tRNA 1N78 509!D:524!D C:A rS* [tHH][-] 11.99 41.23; 12.45 28.78 -45.15 1.68 25.79
tRNA 1N78 509!D:523!D C:G rS*_1 [tHH][-] 11.7 14.88; 9.39 5.49 117.18 0.87 18.92
tRNA 1N78 509!D:522!D C:G rpS* [cHH][-] 11.63 15.5; 21.96 6.46 -128.81 2.52 17.01
tRNA 1N78 510!D:525!D G:C WC [cWW][XIX] 10.66 52.26; 55.67 3.41 0.04 0.31 7.74
tRNA 1N78 511!D:524!D U:A WC [cWW][XX] 10.39 57.42; 59.19 1.78 -5.02 0.09 10.19
tRNA 1N78 512!D:523!D C:G WC [cWW][XIX] 10.68 55.83; 53.67 2.16 1.14 0.07 3.87
tRNA 1N78 513!D:522!D U:G Wb [cWW][XXVIII] 10.31 70.73; 45.66 25.07 -0.08 0.32 7.8
tRNA 1N78 514!D:521!D A:A pfS [cSW][-] 9.49 34.12; 123.2 89.09 -11.13 0.35 9.36
tRNA 1N78 515!D:548!D G:C rWb [tWW][XXII] 10.79 40.97; 57.82 16.85 -174.04 0.14 3.63
tRNA 1N78 518!D:555!D G:U fS_1 [tSW][-] 8.73 30.33; 109.29 78.96 -133.78 0.36 23.63
tRNA 1N78 519!D:556!D G:C WC [cWW][XIX] 10.76 60.24; 48.79 11.45 -19.3 0.81 48.83
tRNA 1N78 520!D:548!D U:C rH* [---][-] 12.67 9.28; 16.67 7.39 97.25 1.16 24.75
tRNA 1N78 522!D:546!D G:A rH*_1 [tHW][-] 12.16 16.52; 22.38 5.85 179.71 0.29 15.07
tRNA 1N78 526!D:544!D G:A WC [cWW][VIII] 12.56 46.54; 50.08 3.55 -15.98 0.55 29.25
tRNA 1N78 527!D:543!D C:G WC [cWW][XIX] 10.55 56.45; 55.88 0.57 -15.64 0.91 28.97
tRNA 1N78 528!D:542!D G:C WC [cWW][XIX] 10.44 54.34; 55.73 1.39 -5.83 0.04 9.7
tRNA 1N78 529!D:541!D G:C WC [cWW][XIX] 10.31 53.9; 56.66 2.76 -5.21 0.02 13.53
tRNA 1N78 530!D:540!D C:G WC [cWW][XIX] 10.42 58.31; 53.22 5.09 -7.17 0.03 11.27
tRNA 1N78 531!D:539!D C:G WC [cWW][XIX] 10.5 55.99; 54.05 1.95 -11.88 0.3 16.9
tRNA 1N78 532!D:538!D C:A sWb [---][-] 11.02 79.68; 28.44 51.24 -9.89 0.63 11.84
tRNA 1N78 549!D:565!D G:C WC [cWW][XIX] 10.52 53.52; 57.5 3.98 -6.96 0.11 11.55
tRNA 1N78 550!D:564!D G:C WC [cWW][XIX] 10.7 51.92; 54.01 2.09 4.57 0.07 3.0
tRNA 1N78 551!D:563!D G:C WC [cWW][XIX] 10.58 58.04; 56.45 1.58 3.37 0.29 2.5
tRNA 1N78 552!D:562!D G:C WC [cWW][XIX] 10.62 55.36; 54.46 0.9 0.48 0.18 2.92
tRNA 1N78 553!D:561!D G:C WC [cWW][XIX] 10.63 46.59; 54.26 7.67 -5.44 0.09 6.4
tRNA 1N78 554!D:558!D U:A rH_1 [tWH][XXIV] 10.13 31.74; 21.15 10.58 -141.07 0.57 13.21