Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1NBS BPC Identified: 143 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNase_P_RNA 1NBS 86!A:239!A G:C WC [cWW][XIX] 10.94 51.77; 53.17 1.4 -2.37 0.07 6.82
RNase_P_RNA 1NBS 87!A:238!A C:G WC [cWW][XIX] 10.53 55.25; 54.19 1.05 0.32 0.3 5.84
RNase_P_RNA 1NBS 88!A:237!A G:C WC [cWW][XIX] 10.43 58.58; 59.58 1.0 5.43 0.02 12.05
RNase_P_RNA 1NBS 89!A:236!A !A:U WC [cWW][XX] 10.09 60.3; 57.04 3.27 -2.05 0.11 10.22
RNase_P_RNA 1NBS 90!A:235!A G:C WC [cWW][XIX] 10.67 55.74; 53.23 2.52 -1.29 0.29 8.3
RNase_P_RNA 1NBS 91!A:112!A C:G WC [cWW][XIX] 10.64 56.12; 56.51 0.39 -0.71 0.18 9.77
RNase_P_RNA 1NBS 92!A:111!A C:G WC [cWW][XIX] 10.61 55.74; 54.53 1.21 -5.17 0.38 5.52
RNase_P_RNA 1NBS 93!A:110!A U:A WC [cWW][XX] 10.31 57.71; 58.25 0.54 0.5 0.19 2.19
RNase_P_RNA 1NBS 94!A:109!A !A:U WC [cWW][XX] 10.31 55.83; 58.74 2.91 2.91 1.06 14.31
RNase_P_RNA 1NBS 95!A:108!A G:C WC [cWW][XIX] 10.68 54.14; 55.01 0.88 2.04 0.43 4.18
RNase_P_RNA 1NBS 96!A:107!A C:G WC [cWW][XIX] 10.75 55.35; 51.08 4.26 -5.15 0.16 10.99
RNase_P_RNA 1NBS 97!A:106!A G:A S [tSH][XI] 10.27 100.96; 0.35 100.61 -115.72 0.97 27.74
RNase_P_RNA 1NBS 98!A:104!A !A:U rH_1 [tWH][XXIV] 10.34 19.62; 31.76 12.13 -100.58 0.25 22.14
RNase_P_RNA 1NBS 100!A:103!A G:A fS [tSW][X] 9.54 111.52; 9.52 102.0 124.71 0.31 24.42
RNase_P_RNA 1NBS 101!A:182!B U:G rS [tSS][-] 8.38 46.75; 88.1 41.35 154.4 2.11 46.96
RNase_P_RNA 1NBS 102!A:220!B C:G WC [cWW][XIX] 10.27 54.54; 57.06 2.52 -12.87 0.14 16.34
RNase_P_RNA 1NBS 113!A:131!A G:C WC [cWW][XIX] 10.5 56.36; 59.15 2.79 -8.42 0.4 17.91
RNase_P_RNA 1NBS 114!A:129!A C:G WC [cWW][XIX] 10.42 54.2; 56.45 2.25 -10.88 0.84 6.58
RNase_P_RNA 1NBS 115!A:128!A !A:U WC [cWW][XX] 10.82 52.63; 51.18 1.46 -2.85 0.09 6.56
RNase_P_RNA 1NBS 116!A:127!A G:C WC [cWW][XIX] 10.64 56.54; 57.35 0.81 -9.93 0.02 15.94
RNase_P_RNA 1NBS 117!A:126!A U:G Wb [cWW][XXVIII] 10.15 76.13; 47.15 28.98 -6.84 0.28 8.61
RNase_P_RNA 1NBS 118!A:125!A C:G WC [cWW][XIX] 10.74 50.63; 56.97 6.34 -9.77 0.24 12.8
RNase_P_RNA 1NBS 119!A:124!A U:A S [tSH][-] 10.48 68.45; 1.62 66.83 -112.37 0.53 3.8
RNase_P_RNA 1NBS 120!A:122!A U:A S(sb:O2*-N7) [---][-] 6.67 82.78; 34.68 48.11 -178.03 1.96 28.96
RNase_P_RNA 1NBS 132!A:234!A G:C WC [cWW][XIX] 10.5 52.13; 55.88 3.75 -6.98 0.15 9.61
RNase_P_RNA 1NBS 132!A:178!A G:A rS [tSS][-] 8.07 84.56; 65.22 19.34 160.54 0.41 18.92
RNase_P_RNA 1NBS 133!A:233!A G:C WC [cWW][XIX] 10.44 57.28; 56.77 0.51 0.87 0.39 16.2
RNase_P_RNA 1NBS 134!A:231!A C:A rH_1 [rWH][XXV] 11.12 33.64; 4.26 29.39 -113.97 0.54 18.54
RNase_P_RNA 1NBS 135!A:174!A !A:U WC [cWW][XX] 10.65 56.79; 54.53 2.26 1.92 0.0 2.15
RNase_P_RNA 1NBS 136!A:173!A G:C WC [cWW][XIX] 10.33 57.5; 61.57 4.07 -0.12 0.29 12.06
RNase_P_RNA 1NBS 137!A:172!A G:C WC [cWW][XIX] 10.66 58.76; 53.66 5.1 8.02 0.01 9.83
RNase_P_RNA 1NBS 138!A:171!A !A:U WC [cWW][XX] 10.66 54.66; 55.0 0.34 -0.37 0.23 4.94
RNase_P_RNA 1NBS 139!A:194!A !A:A rS* [tHH][-] 10.95 19.8; 8.33 11.47 -167.87 0.64 10.2
RNase_P_RNA 1NBS 139!A:170!A !A:A S [tSH][-] 9.37 83.34; 4.98 78.37 -6.0 0.03 3.13
RNase_P_RNA 1NBS 175!A:179!A U:A rWC [tWW][XXI] 10.88 47.63; 23.56 24.07 -166.0 0.09 15.79
RNase_P_RNA 1NBS 176!A:178!A G:A S(sb:O2*-N7) [---][-] 7.44 88.43; 31.87 56.56 -172.19 1.69 32.31
RNase_P_RNA 1NBS 177!A:235!A !A:C rpS(sb:O2*-N3) [cSS][-] 5.49 94.07; 152.7 58.64 -56.83 1.54 45.81
RNase_P_RNA 1NBS 178!A:234!A !A:C rpS(bs:O2-O2*) [cSS][-] 5.7 151.62; 104.62 47.0 -61.19 0.59 11.55
RNase_P_RNA 1NBS 180!A:232!A G:C WC [cWW][XIX] 10.36 56.16; 55.46 0.7 -7.24 0.33 26.63
RNase_P_RNA 1NBS 181!A:231!A U:A WC [cWW][XX] 10.14 58.99; 58.3 0.69 -11.9 0.26 16.08
RNase_P_RNA 1NBS 182!A:228!A G:U Wb [cWW][XXVIII] 10.5 46.05; 64.03 17.98 -6.74 0.16 9.28
RNase_P_RNA 1NBS 183!A:227!A C:G WC [cWW][XIX] 10.61 55.86; 51.93 3.92 -4.14 0.04 6.57
RNase_P_RNA 1NBS 184!A:226!A C:G WC [cWW][XIX] 10.75 52.84; 49.16 3.69 11.15 0.12 13.4
RNase_P_RNA 1NBS 184!A:221!A C:A fS(sb:O2*-N1)_1 [tSS][-] 8.9 104.34; 44.09 60.26 122.63 1.55 47.76
RNase_P_RNA 1NBS 187!A:218!A !A:U rpS(sb:O2*-N3) [cSS][-] 6.32 96.08; 144.13 48.06 -58.08 1.25 17.28
RNase_P_RNA 1NBS 187!A:191!A !A:A rH [tWH][V] 12.35 23.97; 22.01 1.96 -167.87 0.03 26.6
RNase_P_RNA 1NBS 188!A:222!A G:A fS [tSW][X] 9.57 115.82; 22.56 93.26 -67.31 0.61 50.83
RNase_P_RNA 1NBS 188!A:190!A G:G S(sb:O2*-N7)_1 [---][-] 7.18 92.96; 26.24 66.72 -168.09 0.97 49.94
RNase_P_RNA 1NBS 189!A:217!A U:G H*_1 [---][-] 11.04 29.97; 71.03 41.06 -7.86 0.61 30.35
RNase_P_RNA 1NBS 189!A:196!A U:G fS*(bs:N3-O2*) [---][-] 7.16 55.44; 154.32 98.88 -40.36 0.52 24.12
RNase_P_RNA 1NBS 190!A:195!A G:A pfS_1 [---][-] 7.14 140.43; 83.78 56.66 -9.82 0.26 13.97
RNase_P_RNA 1NBS 192!A:224!A C:G H_2 [---][-] 10.7 57.65; 19.82 37.83 0.23 0.26 9.94
RNase_P_RNA 1NBS 196!A:197!A G:U pS* [cHS][-] 7.23 118.11; 52.14 65.97 -36.73 0.99 33.02
RNase_P_RNA 1NBS 197!A:216!A U:A WC [cWW][XX] 11.38 45.81; 57.87 12.06 5.52 0.29 15.64
RNase_P_RNA 1NBS 198!A:215!A C:G WC [cWW][XIX] 10.69 55.01; 65.4 10.39 -3.63 0.75 12.18
RNase_P_RNA 1NBS 199!A:214!A U:A Wb [---][-] 10.06 80.64; 56.71 23.93 -1.65 0.21 4.78
RNase_P_RNA 1NBS 200!A:213!A C:G Wb [---][-] 10.52 66.56; 49.79 16.78 -7.71 0.9 4.74
RNase_P_RNA 1NBS 219!A:221!A G:A S(sb:O2*-N7) [---][-] 7.0 89.67; 40.8 48.87 -150.1 0.91 37.24
RNase_P_RNA 1NBS 222!A:223!A !A:C pS* [cHS][-] 6.43 147.66; 39.92 107.73 42.39 0.79 17.13
RNase_P_RNA 1NBS 229!A:232!A !A:C pS* [cHS][-] 7.86 134.57; 28.19 106.38 -12.05 0.24 9.03
RNase_P_RNA 1NBS 86!B:239!B G:C WC [cWW][XIX] 10.67 52.32; 54.68 2.36 11.28 0.59 22.29
RNase_P_RNA 1NBS 87!B:238!B C:G WC [cWW][XIX] 10.52 54.6; 56.16 1.57 1.77 0.7 11.12
RNase_P_RNA 1NBS 88!B:237!B G:C WC [cWW][XIX] 10.56 56.4; 57.36 0.96 -6.08 0.5 5.44
RNase_P_RNA 1NBS 89!B:236!B A:U WC [cWW][XX] 10.01 61.66; 58.05 3.61 -10.72 0.24 20.94
RNase_P_RNA 1NBS 90!B:235!B G:C WC [cWW][XIX] 10.74 55.73; 50.76 4.97 -12.0 0.32 7.66
RNase_P_RNA 1NBS 91!B:112!B C:G WC [cWW][XIX] 10.71 53.96; 53.05 0.91 -17.93 0.33 17.4
RNase_P_RNA 1NBS 92!B:111!B C:G WC [cWW][XIX] 10.81 54.9; 54.4 0.51 -4.68 0.17 9.51
RNase_P_RNA 1NBS 93!B:110!B U:A WC [cWW][XX] 10.26 57.9; 58.76 0.86 8.98 0.14 9.51
RNase_P_RNA 1NBS 94!B:109!B A:U WC [cWW][XX] 10.16 59.59; 58.53 1.07 1.39 0.51 5.06
RNase_P_RNA 1NBS 95!B:108!B G:C WC [cWW][XIX] 10.63 53.73; 55.8 2.06 4.61 0.23 2.78
RNase_P_RNA 1NBS 96!B:107!B C:G WC [cWW][XIX] 10.42 59.14; 57.59 1.55 1.82 0.12 9.12
RNase_P_RNA 1NBS 97!B:105!B* G:A S [tSH][XI]; S(bp:N1-O2P)_1 [---][-] 9.06 82.12; 23.58 58.54 90.32 2.6 15.1
RNase_P_RNA 1NBS 100!B:103!B G:A fS [tSW][X] 10.1 102.39; 19.2 83.19 80.11 0.18 45.85
RNase_P_RNA 1NBS 100!B:102!B G:C pS*(bs:N4-O2*) [---][-] 8.95 137.13; 19.94 117.19 -70.05 1.95 47.29
RNase_P_RNA 1NBS 104!B:238!B U:G rpS(sp:O2*-O1P)_1 [---][-] 9.44 107.5; 109.95 2.45 -157.72 0.66 44.32
RNase_P_RNA 1NBS 113!B:131!B G:C WC [cWW][XIX] 10.25 55.06; 60.59 5.53 -10.66 0.24 18.34
RNase_P_RNA 1NBS 114!B:129!B C:G WC [cWW][XIX] 10.77 52.27; 53.14 0.88 -19.57 0.14 18.29
RNase_P_RNA 1NBS 115!B:128!B A:U WC [cWW][XX] 11.38 54.29; 44.83 9.46 -2.57 0.67 10.64
RNase_P_RNA 1NBS 116!B:127!B G:C WC [cWW][XIX] 10.86 56.6; 48.37 8.23 -11.11 0.12 21.17
RNase_P_RNA 1NBS 117!B:126!B U:G sWb [---][-] 9.99 91.25; 41.49 49.76 -6.61 0.09 8.45
RNase_P_RNA 1NBS 118!B:125!B C:G WC [cWW][XIX] 10.32 58.77; 64.4 5.63 -8.41 0.57 7.82
RNase_P_RNA 1NBS 132!B:234!B G:C WC [cWW][XIX] 10.59 52.11; 58.74 6.63 -3.19 0.36 14.31
RNase_P_RNA 1NBS 132!B:178!B G:A rS [tSS][-] 7.72 85.25; 61.45 23.8 161.65 0.17 23.0
RNase_P_RNA 1NBS 133!B:233!B G:C WC [cWW][XIX] 10.69 53.04; 53.78 0.74 -14.52 0.94 26.48
RNase_P_RNA 1NBS 134!B:231!B C:A rH_1 [rWH][XXV] 10.78 40.32; 3.38 36.93 147.31 0.36 16.15
RNase_P_RNA 1NBS 135!B:174!B A:U WC [cWW][XX] 10.54 55.59; 55.44 0.15 3.7 0.21 11.33
RNase_P_RNA 1NBS 136!B:173!B G:C WC [cWW][XIX] 10.76 53.77; 54.5 0.73 12.13 0.18 14.96
RNase_P_RNA 1NBS 137!B:172!B G:C WC [cWW][XIX] 10.72 53.24; 53.99 0.75 -1.07 0.53 16.28
RNase_P_RNA 1NBS 138!B:171!B A:U WC [cWW][XX] 10.49 58.18; 53.96 4.21 8.98 0.33 9.44
RNase_P_RNA 1NBS 139!B:170!B A:A S [tSH][-] 9.9 92.27; 8.76 83.52 30.63 0.35 9.27
RNase_P_RNA 1NBS 140!B:169!B A:U rH_1 [tWH][XXIV] 9.0 30.15; 34.72 4.58 -161.76 0.93 27.48
RNase_P_RNA 1NBS 141!B:167!B A:A rS* [tHH][-] 11.45 11.25; 6.36 4.88 -100.96 0.45 8.03
RNase_P_RNA 1NBS 142!B:166!B A:G S [tSH][XI] 9.52 14.46; 100.02 85.56 -0.52 0.24 12.6
RNase_P_RNA 1NBS 143!B:165!B A:U WC [cWW][XX] 10.55 55.17; 53.26 1.91 -5.71 0.01 8.28
RNase_P_RNA 1NBS 144!B:164!B G:C WC [cWW][XIX] 10.66 55.08; 53.8 1.29 -2.32 0.06 6.77
RNase_P_RNA 1NBS 145!B:163!B C:G WC [cWW][XIX] 10.61 55.34; 51.47 3.87 -5.77 0.01 8.7
RNase_P_RNA 1NBS 146!B:208!B C:A rpS(bs:O2-O2*) [cSS][-] 5.76 102.45; 149.53 47.08 -61.41 0.18 23.06
RNase_P_RNA 1NBS 146!B:162!B C:G WC [cWW][XIX] 10.92 52.61; 51.72 0.89 -5.98 0.03 7.49
RNase_P_RNA 1NBS 147!B:207!B U:A rpS(sb:O2*-N3) [cSS][-] 5.73 146.56; 94.86 51.7 -69.85 0.31 29.4
RNase_P_RNA 1NBS 147!B:160!B U:A rH_1 [tWH][XXIV] 9.76 41.83; 19.98 21.86 97.53 0.43 25.47
RNase_P_RNA 1NBS 150!B:159!B G:U Wb [cWW][XXVIII] 10.16 42.01; 74.6 32.59 -12.72 0.44 15.71
RNase_P_RNA 1NBS 151!B:158!B U:A WC [cWW][XX] 10.59 56.0; 64.08 8.08 -16.91 0.21 19.93
RNase_P_RNA 1NBS 152!B:157!B C:G WC [cWW][XIX] 10.67 54.57; 51.19 3.38 -7.85 0.1 13.4
RNase_P_RNA 1NBS 153!B:156!B U:G fS_1 [tSW][-] 9.73 96.33; 22.29 74.04 163.64 0.84 22.17
RNase_P_RNA 1NBS 160!B:206!B A:A rWb* [tWW][I] 13.81 33.29; 26.87 6.42 156.55 0.04 25.65
RNase_P_RNA 1NBS 162!B:208!B G:A rS [tSS][-] 8.55 83.03; 64.17 18.86 160.69 0.88 21.51
RNase_P_RNA 1NBS 163!B:209!B G:U rS(ss:O2*-O2*)_2 [---][-] 5.45 153.9; 140.99 12.9 -128.46 0.99 31.56
RNase_P_RNA 1NBS 168!B:169!B G:U pS* [cHS][-] 6.3 149.97; 47.09 102.89 -22.79 0.93 11.5
RNase_P_RNA 1NBS 175!B:179!B U:A rWC [tWW][XXI] 10.72 55.27; 25.25 30.02 172.48 0.83 9.38
RNase_P_RNA 1NBS 176!B:178!B G:A S(sb:O2*-N7) [---][-] 7.79 83.56; 33.35 50.21 -165.7 1.04 32.79
RNase_P_RNA 1NBS 177!B:235!B A:C rpS(sb:O2*-N3) [cSS][-] 5.28 87.5; 150.27 62.77 -54.92 0.5 44.87
RNase_P_RNA 1NBS 178!B:234!B A:C rpS(bs:O2-O2*) [cSS][-] 5.96 149.46; 103.51 45.95 -62.26 1.67 9.09
RNase_P_RNA 1NBS 180!B:232!B G:C WC [cWW][XIX] 10.55 54.12; 56.44 2.32 -4.68 0.4 21.94
RNase_P_RNA 1NBS 181!B:231!B U:A WC [cWW][XX] 10.18 57.77; 56.7 1.06 -4.71 0.26 12.64
RNase_P_RNA 1NBS 182!B:228!B G:U Wb [cWW][XXVIII] 10.31 45.52; 63.88 18.36 -1.39 0.3 6.71
RNase_P_RNA 1NBS 183!B:227!B C:G WC [cWW][XIX] 10.59 57.72; 52.54 5.17 -3.41 0.33 8.82
RNase_P_RNA 1NBS 184!B:226!B C:G WC [cWW][XIX] 10.98 52.21; 48.57 3.63 13.61 0.2 15.76
RNase_P_RNA 1NBS 184!B:221!B C:A fS(sb:O2*-N1)_1 [tSS][-] 8.95 102.02; 51.08 50.94 135.08 0.2 34.26
RNase_P_RNA 1NBS 185!B:220!B A:G rS* [tHH][-] 13.41 2.61; 7.9 5.29 -120.14 0.52 28.47
RNase_P_RNA 1NBS 187!B:218!B A:U rpS(sb:O2*-N3) [cSS][-] 6.18 96.36; 136.98 40.62 -34.82 0.99 9.97
RNase_P_RNA 1NBS 187!B:191!B A:A rH [tWH][V] 12.34 18.11; 25.35 7.23 -145.07 0.56 25.31
RNase_P_RNA 1NBS 188!B:222!B G:A fS [tSW][X] 9.91 112.04; 15.51 96.53 -84.89 0.8 37.63
RNase_P_RNA 1NBS 188!B:217!B G:G rpS(sb:O2*-N2)_3 [---][-] 9.01 168.6; 81.39 87.21 149.43 0.2 18.48
RNase_P_RNA 1NBS 189!B:217!B U:G H*_1 [---][-] 11.11 28.66; 74.23 45.57 -1.84 0.28 33.47
RNase_P_RNA 1NBS 189!B:196!B U:G pfS*_1 [cWS][-] 5.25 65.02; 146.86 81.84 34.26 0.45 10.9
RNase_P_RNA 1NBS 190!B:195!B G:A pfS_1 [---][-] 6.56 136.84; 80.01 56.82 30.11 0.32 21.05
RNase_P_RNA 1NBS 190!B:193!B G:G pS(sb:O2*-O6) [---][-] 9.12 150.85; 38.17 112.68 3.09 1.32 8.51
RNase_P_RNA 1NBS 191!B:219!B A:G fS [tSW][X] 10.14 5.65; 100.62 94.97 -118.35 0.82 37.12
RNase_P_RNA 1NBS 192!B:224!B C:G H_1 [cWH][-] 10.68 45.47; 24.4 21.07 -0.86 0.35 18.21
RNase_P_RNA 1NBS 193!B:223!B G:C H_2 [---][-] 10.23 26.68; 57.66 30.98 3.86 0.2 8.03
RNase_P_RNA 1NBS 197!B:216!B U:A WC [cWW][XX] 10.92 48.29; 51.79 3.5 -12.6 0.0 15.6
RNase_P_RNA 1NBS 198!B:215!B C:G WC [cWW][XIX] 10.44 55.38; 54.83 0.55 -13.02 0.42 13.86
RNase_P_RNA 1NBS 199!B:214!B U:A WC [cWW][XX] 10.25 57.41; 56.02 1.39 -1.62 0.13 10.9
RNase_P_RNA 1NBS 200!B:213!B C:G WC [cWW][XIX] 10.46 55.63; 57.43 1.79 0.49 0.2 11.38
RNase_P_RNA 1NBS 201!B:212!B A:U WC [cWW][XX] 10.32 58.88; 55.18 3.7 7.86 0.64 2.73
RNase_P_RNA 1NBS 202!B:211!B C:G WC [cWW][XIX] 10.64 57.12; 53.87 3.24 2.51 0.48 11.81
RNase_P_RNA 1NBS 203!B:210!B U:G Wb [cWW][XXVIII] 10.36 70.82; 43.7 27.12 -0.66 0.14 6.87
RNase_P_RNA 1NBS 204!B:209!B A:U WC [cWW][XX] 10.16 60.9; 56.76 4.14 12.29 0.19 13.62
RNase_P_RNA 1NBS 205!B:208!B G:A S [tSH][XI] 9.19 98.59; 15.15 83.44 -83.79 1.7 10.86
RNase_P_RNA 1NBS 205!B:207!B G:A S(sb:O2*-N7) [---][-] 7.49 90.14; 27.1 63.03 -163.51 1.21 25.56
RNase_P_RNA 1NBS 218!B:222!B U:A rH_1 [tWH][XXIV] 9.58 30.82; 21.17 9.65 170.29 0.9 33.57
RNase_P_RNA 1NBS 219!B:221!B G:A S(sb:O2*-N7) [---][-] 7.05 81.15; 37.39 43.76 -156.65 0.48 38.04
RNase_P_RNA 1NBS 229!B:232!B A:C pS* [cHS][-] 7.71 133.37; 30.74 102.63 -5.6 0.02 9.43