Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1NUJ BPC Identified: 41 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNA_aptamer 1NUJ 19!A:49!B G:C WC [cWW][XIX] 10.59 55.29; 55.6 0.31 -13.11 0.01 13.16
RNA_aptamer 1NUJ 20!A:48!B G:C WC [cWW][XIX] 10.62 52.2; 55.53 3.32 -12.15 0.11 14.93
RNA_aptamer 1NUJ 21!A:47!B A:U WC [cWW][XX] 10.49 56.74; 54.45 2.29 -15.05 0.09 25.56
RNA_aptamer 1NUJ 22!A:46!B C:G WC [cWW][XIX] 10.55 58.7; 53.29 5.41 -17.6 0.27 25.35
RNA_aptamer 1NUJ 23!A:45!B C:A sWb [---][-] 10.8 84.93; 29.65 55.28 -4.68 0.22 26.0
RNA_aptamer 1NUJ 24!A:24!G G:G rWb* [tWW][III] 13.52 30.62; 30.46 0.16 112.52 1.27 27.5
RNA_aptamer 1NUJ 25!A:25!G A:A rWb* [tWW][I] 13.37 32.15; 32.0 0.15 128.63 0.99 22.5
RNA_aptamer 1NUJ 27!A:43!B C:G WC [cWW][XIX] 10.67 53.49; 54.29 0.8 -5.68 0.01 11.65
RNA_aptamer 1NUJ 28!A:42!B C:G WC [cWW][XIX] 10.6 54.24; 53.35 0.89 -9.36 0.05 12.89
RNA_aptamer 1NUJ 29!A:41!B A:U WC [cWW][XX] 10.38 56.58; 56.03 0.55 -12.68 0.14 16.35
RNA_aptamer 1NUJ 30!A:40!B G:C WC [cWW][XIX] 10.73 52.45; 53.21 0.77 -16.94 0.11 17.44
RNA_aptamer 1NUJ 19!C:49!D G:C WC [cWW][XIX] 10.56 55.42; 57.49 2.08 0.15 0.46 15.57
RNA_aptamer 1NUJ 20!C:48!D G:C WC [cWW][XIX] 10.64 53.8; 56.02 2.21 -8.53 0.0 9.14
RNA_aptamer 1NUJ 21!C:47!D A:U WC [cWW][XX] 10.43 57.76; 55.49 2.26 -14.41 0.14 18.16
RNA_aptamer 1NUJ 22!C:46!D C:G WC [cWW][XIX] 10.52 58.57; 51.71 6.85 -17.86 0.07 24.17
RNA_aptamer 1NUJ 23!C:45!D C:A sWb [---][-] 10.78 78.91; 32.86 46.05 -7.35 0.25 26.83
RNA_aptamer 1NUJ 24!C:24!E G:G rS [tSS][IV] 8.53 77.09; 77.52 0.43 151.78 1.58 30.17
RNA_aptamer 1NUJ 25!C:25!E A:A rS* [tHH][-] 10.98 13.45; 14.03 0.58 -100.63 0.79 23.56
RNA_aptamer 1NUJ 26!C:26!E G:G rWb* [tWW][III] 13.19 30.65; 31.57 0.92 108.46 1.08 24.94
RNA_aptamer 1NUJ 27!C:43!D C:G WC [cWW][XIX] 10.57 54.79; 55.74 0.95 -3.58 0.08 10.77
RNA_aptamer 1NUJ 28!C:42!D C:G WC [cWW][XIX] 10.53 56.94; 56.32 0.63 -7.48 0.01 8.71
RNA_aptamer 1NUJ 29!C:41!D A:U WC [cWW][XX] 10.25 58.67; 57.05 1.62 -11.54 0.33 13.7
RNA_aptamer 1NUJ 30!C:40!D G:C WC [cWW][XIX] 10.32 54.71; 57.63 2.93 -11.58 0.08 12.19
RNA_aptamer 1NUJ 19!E:49!F G:C WC [cWW][XIX] 10.54 56.12; 57.06 0.94 0.02 0.51 14.81
RNA_aptamer 1NUJ 20!E:48!F G:C WC [cWW][XIX] 10.63 53.3; 55.71 2.41 -9.09 0.05 9.01
RNA_aptamer 1NUJ 21!E:47!F A:U WC [cWW][XX] 10.37 57.6; 55.12 2.48 -14.06 0.1 17.4
RNA_aptamer 1NUJ 22!E:46!F C:G WC [cWW][XIX] 10.54 57.59; 52.23 5.35 -18.05 0.01 24.87
RNA_aptamer 1NUJ 23!E:45!F C:A sWb [---][-] 10.86 78.76; 32.41 46.35 -5.56 0.32 27.4
RNA_aptamer 1NUJ 27!E:43!F C:G WC [cWW][XIX] 10.54 55.56; 55.58 0.02 -1.83 0.03 7.77
RNA_aptamer 1NUJ 28!E:42!F C:G WC [cWW][XIX] 10.55 57.48; 56.47 1.01 -6.54 0.01 9.13
RNA_aptamer 1NUJ 29!E:41!F A:U WC [cWW][XX] 10.27 57.16; 57.41 0.25 -12.63 0.22 14.49
RNA_aptamer 1NUJ 30!E:40!F G:C WC [cWW][XIX] 10.26 55.16; 56.88 1.72 -10.1 0.08 11.69
RNA_aptamer 1NUJ 19!G:49!H G:C WC [cWW][XIX] 10.51 55.26; 55.51 0.25 -12.36 0.16 12.63
RNA_aptamer 1NUJ 20!G:48!H G:C WC [cWW][XIX] 10.61 52.9; 55.48 2.58 -12.09 0.1 15.72
RNA_aptamer 1NUJ 21!G:47!H A:U WC [cWW][XX] 10.49 57.17; 54.38 2.79 -14.07 0.17 23.85
RNA_aptamer 1NUJ 22!G:46!H C:G WC [cWW][XIX] 10.55 58.28; 53.89 4.39 -16.05 0.31 23.9
RNA_aptamer 1NUJ 23!G:45!H C:A sWb [---][-] 10.83 85.64; 30.12 55.52 -4.24 0.29 26.45
RNA_aptamer 1NUJ 27!G:43!H C:G WC [cWW][XIX] 10.66 53.76; 53.28 0.48 -6.97 0.06 12.78
RNA_aptamer 1NUJ 28!G:42!H C:G WC [cWW][XIX] 10.58 54.44; 53.63 0.81 -10.58 0.03 14.45
RNA_aptamer 1NUJ 29!G:41!H A:U WC [cWW][XX] 10.36 56.18; 55.47 0.72 -12.56 0.0 17.35
RNA_aptamer 1NUJ 30!G:40!H G:C WC [cWW][XIX] 10.73 52.24; 53.13 0.89 -15.72 0.01 16.34