Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1NYI BPC Identified: 20 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HH_ribozyme 1NYI 11!A:125!B G:C WC [cWW][XIX] 10.78 50.02; 55.65 5.62 -6.37 0.23 14.19
HH_ribozyme 1NYI 12!A:124!B U:A WC [cWW][XX] 10.58 51.75; 56.94 5.19 -10.3 0.02 13.92
HH_ribozyme 1NYI 13!A:123!B G:C WC [cWW][XIX] 10.54 55.82; 51.88 3.94 -4.36 0.0 6.88
HH_ribozyme 1NYI 14!A:122!B G:C WC [cWW][XIX] 10.57 49.43; 52.82 3.4 -7.36 0.06 13.16
HH_ribozyme 1NYI 15!A:121!B U:A WC [cWW][XX] 10.0 58.86; 59.41 0.55 -9.34 0.08 16.38
HH_ribozyme 1NYI 16!A:120!B C:C Wb [cWW][-] 8.14 85.04; 52.73 32.31 -11.67 0.54 16.52
HH_ribozyme 1NYI 17!A:19!A U:A S(sb:O2*-N7) [---][-] 6.23 79.83; 44.47 35.36 -179.38 1.69 13.17
HH_ribozyme 1NYI 19!A:119!B A:U rpS(bs:O2-O2*) [---][-] 4.39 125.48; 92.5 32.98 -151.96 0.05 35.39
HH_ribozyme 1NYI 20!A:107!B U:A pfS [cSW][-] 9.16 123.69; 37.63 86.06 -5.72 0.11 14.99
HH_ribozyme 1NYI 21!A:106!B G:A S [tSH][XI] 8.97 98.22; 10.04 88.18 -71.3 0.12 25.0
HH_ribozyme 1NYI 22!A:105!B A:G S [tSH][XI] 9.56 3.38; 96.93 93.55 -39.37 0.09 13.55
HH_ribozyme 1NYI 23!A:104!B G:C WC [cWW][XIX] 10.45 52.52; 54.6 2.09 -7.43 0.11 10.04
HH_ribozyme 1NYI 24!A:103!B G:C WC [cWW][XIX] 10.51 56.73; 54.33 2.39 -10.05 0.08 13.44
HH_ribozyme 1NYI 25!A:102!B C:G WC [cWW][XIX] 10.83 53.68; 50.37 3.3 -10.17 0.01 10.55
HH_ribozyme 1NYI 26!A:500!A C:G WC [cWW][XIX] 10.88 56.02; 53.93 2.09 -9.12 0.36 13.51
HH_ribozyme 1NYI 108!B:119!B A:U WC_mo [cWW][XX] 13.3 37.91; 28.92 8.99 -4.88 0.06 28.31
HH_ribozyme 1NYI 109!B:118!B C:G WC [cWW][XIX] 10.65 53.15; 49.2 3.95 -17.99 0.22 18.03
HH_ribozyme 1NYI 110!B:117!B U:A WC [cWW][XX] 10.4 51.9; 53.51 1.61 -8.78 0.25 10.24
HH_ribozyme 1NYI 111!B:116!B C:G WC [cWW][XIX] 10.63 51.71; 53.85 2.14 -1.92 0.43 11.16
HH_ribozyme 1NYI 112!B:115!B G:A S_mo [tSH][XI] 9.72 83.33; 20.03 63.29 -158.05 0.97 20.79