Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1O3Z
BPC Identified: 22
Ambiguities: 0
vRNA |
1O3Z |
1!A:23!B |
C:G |
WC [cWW][XIX] |
10.55 |
49.7; 55.56 |
5.86 |
-12.96 |
0.8 |
28.82 |
vRNA |
1O3Z |
2!A:22!B |
U:A |
WC [cWW][XX] |
10.18 |
55.74; 58.1 |
2.36 |
-8.53 |
0.13 |
19.58 |
vRNA |
1O3Z |
3!A:21!B |
U:A |
WC [cWW][XX] |
10.16 |
57.04; 56.01 |
1.03 |
-6.51 |
0.12 |
14.59 |
vRNA |
1O3Z |
4!A:20!B |
G:C |
WC [cWW][XIX] |
10.71 |
55.52; 55.88 |
0.36 |
-8.25 |
0.37 |
14.53 |
vRNA |
1O3Z |
5!A:19!B |
C:G |
WC [cWW][XIX] |
10.65 |
57.09; 50.73 |
6.36 |
-12.63 |
0.18 |
18.87 |
vRNA |
1O3Z |
6!A:18!B |
U:A |
WC [cWW][XX] |
10.39 |
56.18; 55.14 |
1.04 |
-7.32 |
0.01 |
13.32 |
vRNA |
1O3Z |
7!A:17!B |
G:C |
WC [cWW][XIX] |
10.6 |
54.43; 53.78 |
0.65 |
-7.74 |
0.04 |
13.81 |
vRNA |
1O3Z |
9!A:16!B |
G:A |
WC [cWW][VIII] |
12.17 |
53.31; 56.96 |
3.66 |
-4.76 |
0.1 |
27.07 |
vRNA |
1O3Z |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.49 |
54.1; 58.61 |
4.51 |
-11.39 |
0.45 |
18.03 |
vRNA |
1O3Z |
11!A:14!B |
U:A |
WC [cWW][XX] |
10.4 |
54.04; 56.82 |
2.78 |
-8.65 |
0.06 |
14.26 |
vRNA |
1O3Z |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.68 |
51.61; 57.84 |
6.23 |
-6.37 |
0.09 |
8.69 |
vRNA |
1O3Z |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.49 |
55.1; 56.54 |
1.45 |
-4.43 |
0.22 |
4.96 |
vRNA |
1O3Z |
14!A:11!B |
A:U |
WC [cWW][XX] |
10.34 |
57.15; 54.99 |
2.16 |
-7.0 |
0.32 |
12.05 |
vRNA |
1O3Z |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.58 |
53.23; 54.37 |
1.14 |
-11.24 |
0.33 |
17.63 |
vRNA |
1O3Z |
16!A:9!B |
A:G |
WC [cWW][VIII] |
12.56 |
49.57; 50.77 |
1.2 |
-5.12 |
0.22 |
15.65 |
vRNA |
1O3Z |
17!A:7!B |
C:G |
WC [cWW][XIX] |
10.81 |
53.68; 51.65 |
2.03 |
-2.95 |
0.13 |
5.14 |
vRNA |
1O3Z |
18!A:6!B |
A:U |
WC [cWW][XX] |
10.42 |
53.93; 57.53 |
3.61 |
-7.51 |
0.33 |
13.5 |
vRNA |
1O3Z |
19!A:5!B |
G:C |
WC [cWW][XIX] |
10.49 |
51.68; 53.97 |
2.3 |
-13.25 |
0.22 |
18.42 |
vRNA |
1O3Z |
20!A:4!B |
C:G |
WC [cWW][XIX] |
10.41 |
58.52; 55.31 |
3.21 |
-9.15 |
0.21 |
17.45 |
vRNA |
1O3Z |
21!A:3!B |
A:U |
WC [cWW][XX] |
10.26 |
58.12; 58.4 |
0.28 |
-10.41 |
0.02 |
15.1 |
vRNA |
1O3Z |
22!A:2!B |
A:U |
WC [cWW][XX] |
10.29 |
54.89; 57.94 |
3.05 |
-9.2 |
0.35 |
15.51 |
vRNA |
1O3Z |
23!A:1!B |
G:C |
WC [cWW][XIX] |
10.51 |
56.08; 57.06 |
0.97 |
-9.22 |
0.09 |
16.09 |