Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1Q9A
BPC Identified: 13
Ambiguities: 0
| rRNA |
1Q9A |
2649!A:2671!A |
C:G |
WC [cWW][XIX] |
10.57 |
54.08; 51.56 |
2.52 |
-13.44 |
0.41 |
20.74 |
| rRNA |
1Q9A |
2650!A:2670!A |
U:A |
WC [cWW][XX] |
10.47 |
58.71; 56.38 |
2.33 |
-9.25 |
0.39 |
12.01 |
| rRNA |
1Q9A |
2651!A:2669!A |
C:G |
WC [cWW][XIX] |
10.5 |
58.25; 56.13 |
2.11 |
-12.34 |
0.12 |
18.11 |
| rRNA |
1Q9A |
2652!A:2668!A |
C:G |
WC [cWW][XIX] |
10.74 |
55.57; 50.51 |
5.06 |
-8.23 |
0.21 |
13.97 |
| rRNA |
1Q9A |
2653!A:2667!A |
U:C |
sWC [---][-] |
10.78 |
82.02; 15.91 |
66.1 |
-5.43 |
0.27 |
15.61 |
| rRNA |
1Q9A |
2654!A:2666!A |
A:C |
rS* [tHH][-] |
12.61 |
12.02; 37.24 |
25.22 |
-63.45 |
1.37 |
25.72 |
| rRNA |
1Q9A |
2655!A:2665!A |
G:A |
S(bp:N1-O2P)_3 [---][-] |
10.75 |
83.56; 61.03 |
22.53 |
-169.11 |
0.99 |
20.66 |
| rRNA |
1Q9A |
2655!A:2656!A |
G:U |
pS* [cHS][-] |
6.68 |
144.08; 51.65 |
92.43 |
8.71 |
1.33 |
5.09 |
| rRNA |
1Q9A |
2656!A:2665!A |
U:A |
rH_1 [tWH][XXIV] |
9.56 |
29.51; 23.29 |
6.22 |
-165.64 |
0.16 |
20.65 |
| rRNA |
1Q9A |
2656!A:2664!A |
U:G |
S*(pb:O2P-N1) [---][-] |
10.02 |
21.57; 69.65 |
48.08 |
99.11 |
2.53 |
8.08 |
| rRNA |
1Q9A |
2657!A:2664!A |
A:G |
S [tSH][XI] |
9.45 |
8.96; 98.91 |
89.95 |
7.43 |
0.12 |
4.75 |
| rRNA |
1Q9A |
2658!A:2663!A |
C:G |
WC [cWW][XIX] |
10.58 |
57.06; 56.63 |
0.43 |
0.33 |
0.47 |
7.22 |
| rRNA |
1Q9A |
2659!A:2662!A |
G:A |
S [tSH][XI] |
9.3 |
98.52; 13.61 |
84.91 |
-109.84 |
0.66 |
19.07 |