Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1QF6 BPC Identified: 33 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1QF6 1!B:72!B G:C WC [cWW][XIX] 10.54 53.2; 51.68 1.52 -12.52 0.27 9.2
tRNA 1QF6 2!B:71!B C:G WC [cWW][XIX] 10.52 54.86; 52.03 2.83 -2.91 0.05 7.22
tRNA 1QF6 3!B:70!B C:G WC [cWW][XIX] 10.52 55.73; 53.33 2.41 3.26 0.5 7.52
tRNA 1QF6 4!B:69!B G:C WC [cWW][XIX] 10.62 56.52; 50.51 6.01 -2.36 0.0 8.29
tRNA 1QF6 5!B:68!B A:U WC [cWW][XX] 10.64 55.13; 54.05 1.08 -11.31 0.13 17.71
tRNA 1QF6 6!B:67!B U:A WC [cWW][XX] 10.69 56.7; 54.79 1.92 -17.17 0.02 19.77
tRNA 1QF6 7!B:66!B A:U WC [cWW][XX] 10.7 54.64; 51.39 3.26 -3.09 0.14 4.67
tRNA 1QF6 8!B:21!B U:A fS(sb:O2*-N1) [tSW][-] 8.32 102.62; 63.58 39.04 146.96 0.21 28.32
tRNA 1QF6 8!B:14!B U:A rH_1 [tWH][XXIV] 9.44 34.65; 21.4 13.26 174.19 0.03 6.59
tRNA 1QF6 9!B:23!B A:A rS* [tHH][-] 11.25 16.55; 9.22 7.32 114.7 0.8 19.22
tRNA 1QF6 10!B:25!B G:C WC [cWW][XIX] 10.39 54.02; 59.33 5.31 1.46 0.36 21.55
tRNA 1QF6 11!B:24!B C:G WC [cWW][XIX] 10.75 57.44; 50.89 6.55 -7.52 0.36 15.68
tRNA 1QF6 12!B:23!B U:A WC [cWW][XX] 10.74 53.91; 53.25 0.66 -7.69 0.03 9.42
tRNA 1QF6 13!B:22!B C:G WC [cWW][XIX] 10.32 62.23; 53.44 8.79 5.97 0.28 8.95
tRNA 1QF6 14!B:21!B A:A pfS [cSW][-] 9.97 29.43; 116.51 87.08 -28.78 0.73 22.96
tRNA 1QF6 15!B:48!B G:C rWb [tWW][XXII] 10.56 35.46; 57.44 21.98 -173.56 0.06 2.92
tRNA 1QF6 18!B:55!B G:U fS_PSU [---][-] 8.93 25.39; 123.73 98.34 -140.55 0.15 12.51
tRNA 1QF6 19!B:56!B G:C WC [cWW][XIX] 10.24 56.26; 53.5 2.76 -31.8 0.55 34.48
tRNA 1QF6 22!B:46!B G:G rH_1 [tWH][VII] 10.83 34.13; 30.93 3.2 133.91 0.85 24.96
tRNA 1QF6 26!B:44!B A:A Wb [cWW][-] 13.56 28.36; 49.32 20.96 -5.35 0.72 36.03
tRNA 1QF6 27!B:43!B G:A WC [cWW][VIII] 12.54 47.98; 48.36 0.38 -16.45 0.57 27.7
tRNA 1QF6 28!B:42!B C:G WC [cWW][XIX] 10.84 52.04; 50.27 1.76 -14.19 0.67 25.19
tRNA 1QF6 29!B:41!B G:C WC [cWW][XIX] 10.7 56.0; 55.74 0.26 0.39 0.33 14.66
tRNA 1QF6 30!B:40!B C:G WC [cWW][XIX] 10.34 54.6; 60.12 5.52 4.38 0.2 11.53
tRNA 1QF6 31!B:39!B A:U WC [cWW][XX] 10.07 61.18; 60.58 0.6 3.8 0.2 2.92
tRNA 1QF6 35!B:36!B G:U pS* [cHS][-] 6.77 138.34; 53.19 85.15 23.36 0.06 14.7
tRNA 1QF6 49!B:65!B G:U Wb [cWW][XXVIII] 10.28 42.64; 65.03 22.39 0.39 0.0 6.08
tRNA 1QF6 50!B:64!B U:A WC [cWW][XX] 10.36 56.05; 54.69 1.36 -10.71 0.3 15.37
tRNA 1QF6 51!B:63!B A:U WC [cWW][XX] 10.37 55.6; 51.63 3.97 -12.98 0.03 9.52
tRNA 1QF6 52!B:62!B G:C WC [cWW][XIX] 10.31 53.05; 54.23 1.18 -13.37 0.08 12.11
tRNA 1QF6 53!B:61!B G:C WC [cWW][XIX] 10.56 53.64; 49.51 4.13 -3.91 0.37 12.3
tRNA 1QF6 54!B:58!B U:A rH_1 [tWH][XXIV] 9.59 25.2; 22.12 3.08 166.72 0.11 3.63
tRNA 1QF6 55!B:57!B U:G S_PSU(sb:O2*-N7) [---][-] 6.88 89.31; 43.68 45.62 -179.35 2.26 19.35