Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1QRS
BPC Identified: 33
Ambiguities: 0
| tRNA |
1QRS |
2!B:71!B |
G:C |
WC [cWW][XIX] |
10.69 |
50.4; 53.71 |
3.31 |
-3.81 |
0.6 |
13.36 |
| tRNA |
1QRS |
3!B:70!B |
G:C |
WC [cWW][XIX] |
10.37 |
54.22; 55.89 |
1.67 |
-5.31 |
0.15 |
7.98 |
| tRNA |
1QRS |
4!B:69!B |
G:C |
WC [cWW][XIX] |
10.61 |
53.57; 55.2 |
1.63 |
-10.55 |
0.28 |
18.65 |
| tRNA |
1QRS |
5!B:68!B |
G:C |
WC [cWW][XIX] |
10.5 |
52.94; 54.16 |
1.22 |
-14.62 |
0.74 |
24.35 |
| tRNA |
1QRS |
6!B:67!B |
U:A |
WC [cWW][XX] |
10.3 |
57.47; 55.91 |
1.56 |
-11.08 |
0.44 |
15.98 |
| tRNA |
1QRS |
7!B:66!B |
A:U |
WC [cWW][XX] |
10.46 |
54.34; 52.29 |
2.05 |
-6.16 |
0.14 |
7.04 |
| tRNA |
1QRS |
8!B:21!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.29 |
101.36; 59.49 |
41.87 |
155.33 |
0.2 |
21.1 |
| tRNA |
1QRS |
8!B:14!B |
U:A |
rH_1 [tWH][XXIV] |
9.57 |
36.6; 15.95 |
20.64 |
166.21 |
0.13 |
7.8 |
| tRNA |
1QRS |
9!B:23!B |
C:G |
rS*_2 [---][-] |
12.44 |
17.35; 9.7 |
7.64 |
50.69 |
0.83 |
28.99 |
| tRNA |
1QRS |
10!B:25!B |
G:C |
WC [cWW][XIX] |
10.35 |
50.24; 57.35 |
7.11 |
-3.45 |
0.13 |
4.66 |
| tRNA |
1QRS |
11!B:24!B |
C:G |
WC [cWW][XIX] |
10.51 |
57.01; 54.71 |
2.3 |
-3.61 |
0.09 |
7.32 |
| tRNA |
1QRS |
12!B:23!B |
C:G |
WC [cWW][XIX] |
10.73 |
54.95; 50.82 |
4.13 |
0.22 |
0.05 |
6.52 |
| tRNA |
1QRS |
13!B:45!B |
A:A |
rWb* [tWW][I] |
13.38 |
32.73; 29.02 |
3.71 |
159.08 |
0.3 |
13.85 |
| tRNA |
1QRS |
13!B:22!B |
A:A |
S [tSH][-] |
9.36 |
93.99; 6.93 |
87.06 |
-6.3 |
0.08 |
4.37 |
| tRNA |
1QRS |
14!B:21!B |
A:A |
pfS [cSW][-] |
9.67 |
35.21; 120.29 |
85.08 |
-16.98 |
0.64 |
13.34 |
| tRNA |
1QRS |
15!B:48!B |
G:C |
rWb [tWW][XXII] |
10.32 |
41.7; 57.18 |
15.48 |
178.43 |
0.63 |
18.03 |
| tRNA |
1QRS |
18!B:55!B |
G:U |
fS_1 [tSW][-] |
8.6 |
29.55; 108.62 |
79.06 |
-129.16 |
0.24 |
24.99 |
| tRNA |
1QRS |
19!B:56!B |
G:C |
WC [cWW][XIX] |
10.19 |
59.28; 52.96 |
6.32 |
-24.76 |
0.19 |
23.8 |
| tRNA |
1QRS |
19!B:20!B |
G:U |
pS* [cHS][-] |
6.2 |
152.15; 48.03 |
104.12 |
22.14 |
0.33 |
32.83 |
| tRNA |
1QRS |
26!B:44!B |
A:C |
Wb [cWW][-] |
11.17 |
32.37; 68.37 |
36.0 |
-7.25 |
0.07 |
13.76 |
| tRNA |
1QRS |
27!B:43!B |
C:G |
WC [cWW][XIX] |
10.52 |
54.75; 51.75 |
2.99 |
-7.59 |
0.3 |
14.19 |
| tRNA |
1QRS |
28!B:42!B |
C:G |
WC [cWW][XIX] |
10.47 |
52.53; 56.39 |
3.86 |
5.01 |
0.17 |
11.8 |
| tRNA |
1QRS |
29!B:41!B |
G:C |
WC [cWW][XIX] |
10.03 |
51.36; 63.77 |
12.41 |
-5.9 |
0.1 |
12.05 |
| tRNA |
1QRS |
30!B:40!B |
G:C |
WC [cWW][XIX] |
10.21 |
55.83; 61.85 |
6.01 |
8.68 |
0.1 |
14.56 |
| tRNA |
1QRS |
31!B:39!B |
A:U |
WC [cWW][XX] |
10.8 |
57.86; 53.13 |
4.73 |
9.33 |
0.41 |
14.7 |
| tRNA |
1QRS |
33!B:37!B |
U:A |
S [tSH][-] |
9.45 |
82.41; 5.83 |
76.58 |
176.82 |
0.12 |
14.5 |
| tRNA |
1QRS |
49!B:65!B |
C:G |
WC [cWW][XIX] |
10.44 |
54.21; 50.72 |
3.5 |
-9.54 |
0.2 |
12.46 |
| tRNA |
1QRS |
50!B:64!B |
G:C |
WC [cWW][XIX] |
10.17 |
56.17; 61.74 |
5.57 |
-6.63 |
0.21 |
9.24 |
| tRNA |
1QRS |
51!B:63!B |
A:U |
WC [cWW][XX] |
10.35 |
54.84; 50.71 |
4.12 |
-7.91 |
0.15 |
6.5 |
| tRNA |
1QRS |
52!B:62!B |
G:C |
WC [cWW][XIX] |
10.5 |
53.62; 55.61 |
1.98 |
-6.39 |
0.1 |
9.49 |
| tRNA |
1QRS |
53!B:61!B |
G:C |
WC [cWW][XIX] |
10.36 |
56.32; 57.98 |
1.66 |
-4.93 |
0.76 |
19.29 |
| tRNA |
1QRS |
54!B:58!B |
U:A |
rH_1 [tWH][XXIV] |
9.53 |
39.53; 16.08 |
23.45 |
154.27 |
0.3 |
15.17 |
| tRNA |
1QRS |
55!B:57!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.59 |
80.16; 36.87 |
43.29 |
-163.32 |
1.56 |
33.84 |