Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1QRT
BPC Identified: 33
Ambiguities: 0
| tRNA |
1QRT |
2!B:71!B |
G:C |
WC [cWW][XIX] |
10.68 |
51.09; 53.51 |
2.41 |
-2.83 |
0.44 |
12.83 |
| tRNA |
1QRT |
3!B:70!B |
G:C |
WC [cWW][XIX] |
10.3 |
52.38; 58.27 |
5.89 |
-10.32 |
0.15 |
9.97 |
| tRNA |
1QRT |
4!B:69!B |
G:C |
WC [cWW][XIX] |
10.62 |
53.64; 55.5 |
1.85 |
-9.98 |
0.26 |
15.08 |
| tRNA |
1QRT |
5!B:68!B |
G:C |
WC [cWW][XIX] |
10.56 |
52.59; 55.02 |
2.42 |
-12.38 |
0.62 |
21.66 |
| tRNA |
1QRT |
6!B:67!B |
U:A |
WC [cWW][XX] |
10.2 |
57.0; 57.52 |
0.51 |
-13.8 |
0.5 |
18.03 |
| tRNA |
1QRT |
7!B:66!B |
A:U |
WC [cWW][XX] |
10.58 |
54.83; 51.76 |
3.06 |
-6.36 |
0.12 |
5.72 |
| tRNA |
1QRT |
8!B:21!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.41 |
101.79; 58.93 |
42.86 |
155.26 |
0.2 |
25.03 |
| tRNA |
1QRT |
8!B:14!B |
U:A |
rH_1 [tWH][XXIV] |
9.49 |
37.05; 13.67 |
23.38 |
-179.33 |
0.46 |
6.95 |
| tRNA |
1QRT |
9!B:23!B |
C:G |
rS*_2 [---][-] |
12.53 |
11.83; 9.36 |
2.47 |
55.93 |
1.05 |
26.13 |
| tRNA |
1QRT |
10!B:25!B |
G:C |
WC [cWW][XIX] |
10.43 |
53.43; 55.8 |
2.37 |
-5.87 |
0.22 |
8.08 |
| tRNA |
1QRT |
11!B:24!B |
C:G |
WC [cWW][XIX] |
10.53 |
55.73; 53.47 |
2.26 |
-5.55 |
0.24 |
8.19 |
| tRNA |
1QRT |
12!B:23!B |
C:G |
WC [cWW][XIX] |
10.65 |
51.66; 52.31 |
0.65 |
-2.89 |
0.1 |
9.29 |
| tRNA |
1QRT |
13!B:45!B |
A:A |
rWb* [tWW][I] |
13.34 |
32.94; 30.29 |
2.65 |
163.48 |
0.09 |
12.55 |
| tRNA |
1QRT |
13!B:22!B |
A:A |
S [tSH][-] |
9.32 |
95.43; 7.19 |
88.24 |
-11.54 |
0.08 |
4.84 |
| tRNA |
1QRT |
14!B:21!B |
A:A |
pfS [cSW][-] |
9.64 |
38.55; 118.05 |
79.5 |
-23.49 |
0.72 |
19.34 |
| tRNA |
1QRT |
15!B:48!B |
G:C |
rWb [tWW][XXII] |
10.37 |
41.38; 57.05 |
15.67 |
177.74 |
0.91 |
19.87 |
| tRNA |
1QRT |
18!B:55!B |
G:U |
fS_1 [tSW][-] |
8.7 |
32.76; 107.24 |
74.47 |
-141.88 |
0.37 |
21.61 |
| tRNA |
1QRT |
19!B:56!B |
G:C |
WC [cWW][XIX] |
10.23 |
57.92; 52.43 |
5.49 |
-17.38 |
0.17 |
16.15 |
| tRNA |
1QRT |
26!B:44!B |
A:C |
Wb [cWW][-] |
11.22 |
34.55; 69.09 |
34.53 |
-7.14 |
0.1 |
12.0 |
| tRNA |
1QRT |
27!B:43!B |
C:G |
WC [cWW][XIX] |
10.19 |
60.15; 52.28 |
7.87 |
-7.34 |
0.33 |
19.42 |
| tRNA |
1QRT |
28!B:42!B |
C:G |
WC [cWW][XIX] |
10.35 |
56.31; 58.46 |
2.15 |
-1.0 |
0.07 |
15.71 |
| tRNA |
1QRT |
29!B:41!B |
G:C |
WC [cWW][XIX] |
10.01 |
50.83; 65.15 |
14.32 |
-3.74 |
0.01 |
9.69 |
| tRNA |
1QRT |
30!B:40!B |
G:C |
WC [cWW][XIX] |
10.08 |
55.66; 67.13 |
11.47 |
8.75 |
0.24 |
10.25 |
| tRNA |
1QRT |
31!B:39!B |
A:U |
WC [cWW][XX] |
10.87 |
55.08; 57.98 |
2.9 |
11.05 |
0.86 |
24.43 |
| tRNA |
1QRT |
32!B:38!B |
U:U |
Wb_mo [cWW][XVI] |
10.74 |
60.3; 28.22 |
32.08 |
20.33 |
0.3 |
13.0 |
| tRNA |
1QRT |
46!B:47!B |
U:U |
pS [cSH][-] |
5.75 |
167.62; 33.52 |
134.1 |
-139.67 |
0.82 |
64.13 |
| tRNA |
1QRT |
49!B:65!B |
C:G |
WC [cWW][XIX] |
10.57 |
52.15; 50.51 |
1.64 |
-5.13 |
0.41 |
10.28 |
| tRNA |
1QRT |
50!B:64!B |
G:C |
WC [cWW][XIX] |
10.17 |
51.47; 62.13 |
10.65 |
-6.86 |
0.12 |
10.62 |
| tRNA |
1QRT |
51!B:63!B |
A:U |
WC [cWW][XX] |
10.47 |
55.34; 49.05 |
6.29 |
-9.52 |
0.08 |
13.55 |
| tRNA |
1QRT |
52!B:62!B |
G:C |
WC [cWW][XIX] |
10.44 |
53.25; 57.82 |
4.57 |
-13.71 |
0.12 |
15.1 |
| tRNA |
1QRT |
53!B:61!B |
G:C |
WC [cWW][XIX] |
10.17 |
54.75; 58.3 |
3.55 |
-9.04 |
0.67 |
19.74 |
| tRNA |
1QRT |
54!B:58!B |
U:A |
rH_1 [tWH][XXIV] |
9.81 |
36.37; 14.76 |
21.6 |
156.48 |
0.57 |
15.36 |
| tRNA |
1QRT |
55!B:57!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.75 |
81.72; 32.24 |
49.47 |
-170.19 |
1.65 |
32.59 |