Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1QRU
BPC Identified: 32
Ambiguities: 0
| tRNA |
1QRU |
2!B:71!B |
G:C |
WC [cWW][XIX] |
10.8 |
52.16; 53.89 |
1.73 |
-0.52 |
0.88 |
19.1 |
| tRNA |
1QRU |
3!B:70!B |
G:C |
WC [cWW][XIX] |
10.39 |
52.44; 58.23 |
5.79 |
-6.18 |
0.09 |
8.68 |
| tRNA |
1QRU |
4!B:69!B |
G:C |
WC [cWW][XIX] |
10.58 |
53.29; 54.44 |
1.15 |
-6.74 |
0.11 |
11.5 |
| tRNA |
1QRU |
5!B:68!B |
G:C |
WC [cWW][XIX] |
10.49 |
55.32; 55.95 |
0.63 |
-11.44 |
0.77 |
22.52 |
| tRNA |
1QRU |
6!B:67!B |
U:A |
WC [cWW][XX] |
10.15 |
58.91; 57.61 |
1.3 |
-10.53 |
0.44 |
18.35 |
| tRNA |
1QRU |
7!B:66!B |
A:U |
WC [cWW][XX] |
10.73 |
56.09; 51.28 |
4.81 |
-3.53 |
0.04 |
3.12 |
| tRNA |
1QRU |
8!B:21!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.14 |
100.34; 58.01 |
42.33 |
156.31 |
0.16 |
25.53 |
| tRNA |
1QRU |
8!B:14!B |
U:A |
rH_1 [tWH][XXIV] |
9.65 |
35.29; 15.19 |
20.1 |
177.01 |
0.12 |
11.12 |
| tRNA |
1QRU |
9!B:23!B |
C:G |
rS*_2 [---][-] |
12.62 |
15.78; 10.0 |
5.78 |
40.6 |
1.01 |
36.15 |
| tRNA |
1QRU |
10!B:25!B |
G:C |
WC [cWW][XIX] |
10.49 |
51.27; 56.99 |
5.72 |
-4.12 |
0.15 |
2.78 |
| tRNA |
1QRU |
11!B:24!B |
C:G |
WC [cWW][XIX] |
10.67 |
55.51; 54.4 |
1.11 |
-6.37 |
0.03 |
7.57 |
| tRNA |
1QRU |
12!B:23!B |
C:G |
WC [cWW][XIX] |
10.61 |
52.64; 51.46 |
1.18 |
-2.29 |
0.11 |
12.2 |
| tRNA |
1QRU |
13!B:45!B |
A:A |
rWb* [tWW][I] |
13.51 |
31.59; 26.17 |
5.42 |
154.22 |
0.7 |
15.85 |
| tRNA |
1QRU |
13!B:22!B |
A:A |
S [tSH][-] |
9.25 |
92.74; 7.1 |
85.64 |
-12.86 |
0.16 |
6.41 |
| tRNA |
1QRU |
14!B:21!B |
A:A |
pfS [cSW][-] |
9.66 |
34.69; 119.27 |
84.59 |
-21.32 |
0.57 |
16.01 |
| tRNA |
1QRU |
15!B:48!B |
G:C |
rWb [tWW][XXII] |
10.31 |
41.77; 58.74 |
16.97 |
179.48 |
1.13 |
23.31 |
| tRNA |
1QRU |
18!B:55!B |
G:U |
fS_1 [tSW][-] |
8.79 |
27.16; 108.8 |
81.64 |
-142.0 |
0.03 |
23.82 |
| tRNA |
1QRU |
19!B:56!B |
G:C |
WC [cWW][XIX] |
10.18 |
60.86; 52.15 |
8.71 |
-22.96 |
0.03 |
22.77 |
| tRNA |
1QRU |
20!B:57!B |
U:G |
fS*(bs:N3-O2*) [---][-] |
7.33 |
42.19; 139.11 |
96.92 |
-93.69 |
1.04 |
69.98 |
| tRNA |
1QRU |
26!B:44!B |
A:C |
Wb [cWW][-] |
10.88 |
34.93; 70.46 |
35.53 |
-8.25 |
0.02 |
10.86 |
| tRNA |
1QRU |
27!B:43!B |
C:G |
WC [cWW][XIX] |
10.2 |
57.33; 54.54 |
2.78 |
-13.19 |
0.53 |
19.96 |
| tRNA |
1QRU |
28!B:42!B |
C:G |
WC [cWW][XIX] |
10.5 |
54.41; 55.81 |
1.4 |
-3.83 |
0.36 |
13.82 |
| tRNA |
1QRU |
29!B:41!B |
G:C |
Wb [---][-] |
10.14 |
47.95; 63.51 |
15.57 |
-3.63 |
0.17 |
10.61 |
| tRNA |
1QRU |
30!B:40!B |
G:C |
WC [cWW][XIX] |
10.29 |
54.86; 60.59 |
5.73 |
4.68 |
0.13 |
13.18 |
| tRNA |
1QRU |
31!B:39!B |
A:U |
WC [cWW][XX] |
10.88 |
58.36; 56.78 |
1.57 |
3.45 |
0.45 |
21.18 |
| tRNA |
1QRU |
49!B:65!B |
C:G |
WC [cWW][XIX] |
10.4 |
56.07; 48.11 |
7.96 |
-6.55 |
0.26 |
13.72 |
| tRNA |
1QRU |
50!B:64!B |
G:C |
WC [cWW][XIX] |
10.28 |
55.65; 62.17 |
6.53 |
-5.6 |
0.08 |
6.21 |
| tRNA |
1QRU |
51!B:63!B |
A:U |
WC [cWW][XX] |
10.3 |
55.1; 50.04 |
5.07 |
-11.72 |
0.19 |
17.34 |
| tRNA |
1QRU |
52!B:62!B |
G:C |
WC [cWW][XIX] |
10.55 |
52.9; 57.58 |
4.68 |
-5.82 |
0.22 |
11.82 |
| tRNA |
1QRU |
53!B:61!B |
G:C |
WC [cWW][XIX] |
10.29 |
55.36; 59.41 |
4.05 |
-3.78 |
0.35 |
10.62 |
| tRNA |
1QRU |
54!B:58!B |
U:A |
rH_1 [tWH][XXIV] |
9.68 |
33.88; 18.91 |
14.98 |
160.27 |
0.04 |
10.98 |
| tRNA |
1QRU |
55!B:57!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.73 |
83.34; 34.26 |
49.09 |
-173.52 |
1.62 |
32.47 |