Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1QZW
BPC Identified: 60
Ambiguities: 0
SRP_RNA |
1QZW |
181!B:223!B |
C:G |
WC [cWW][XIX] |
10.49 |
44.92; 50.58 |
5.66 |
18.85 |
0.33 |
37.37 |
SRP_RNA |
1QZW |
182!B:222!B |
C:G |
WC [cWW][XIX] |
10.91 |
44.24; 51.68 |
7.45 |
16.28 |
1.14 |
38.62 |
SRP_RNA |
1QZW |
183!B:221!B |
G:C |
WC [cWW][XIX] |
10.92 |
49.52; 46.64 |
2.88 |
-24.15 |
0.99 |
21.6 |
SRP_RNA |
1QZW |
184!B:220!B |
G:C |
WC [cWW][XIX] |
10.58 |
55.45; 52.82 |
2.63 |
-10.41 |
0.02 |
32.08 |
SRP_RNA |
1QZW |
185!B:219!B |
G:C |
WC [cWW][XIX] |
9.75 |
63.31; 62.82 |
0.49 |
-5.6 |
1.33 |
24.65 |
SRP_RNA |
1QZW |
192!B:215!B |
G:C |
WC [cWW][XIX] |
10.58 |
56.79; 56.96 |
0.17 |
0.21 |
0.22 |
19.28 |
SRP_RNA |
1QZW |
193!B:214!B |
G:C |
WC [cWW][XIX] |
10.86 |
53.88; 53.41 |
0.47 |
-1.34 |
0.17 |
5.81 |
SRP_RNA |
1QZW |
194!B:213!B |
C:A |
WC [---][-] |
10.4 |
59.99; 64.25 |
4.26 |
-14.41 |
0.07 |
18.13 |
SRP_RNA |
1QZW |
196!B:211!B |
A:C |
rH_1 [rWH][XXV] |
11.08 |
2.06; 26.59 |
24.54 |
-19.19 |
0.36 |
38.91 |
SRP_RNA |
1QZW |
196!B:210!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.09 |
32.14; 62.6 |
30.47 |
169.06 |
2.47 |
2.73 |
SRP_RNA |
1QZW |
197!B:210!B |
G:G |
S_1 [tSH][-] |
11.63 |
4.79; 78.72 |
73.92 |
-17.56 |
0.57 |
16.07 |
SRP_RNA |
1QZW |
199!B:208!B |
C:G |
WC [cWW][XIX] |
10.61 |
58.22; 58.03 |
0.2 |
-4.68 |
0.24 |
13.71 |
SRP_RNA |
1QZW |
200!B:207!B |
C:G |
WC [cWW][XIX] |
11.12 |
50.89; 49.07 |
1.82 |
-3.29 |
0.12 |
5.85 |
SRP_RNA |
1QZW |
201!B:206!B |
C:G |
WC [cWW][XIX] |
11.14 |
48.79; 50.02 |
1.23 |
16.68 |
0.44 |
14.03 |
SRP_RNA |
1QZW |
202!B:205!B |
G:A |
S [tSH][XI] |
8.83 |
89.15; 15.8 |
73.35 |
-91.45 |
1.31 |
8.33 |
SRP_RNA |
1QZW |
181!D:223!D |
C:G |
WC [cWW][XIX] |
10.49 |
44.91; 50.61 |
5.69 |
18.86 |
0.33 |
37.35 |
SRP_RNA |
1QZW |
182!D:222!D |
C:G |
WC [cWW][XIX] |
10.9 |
44.26; 51.71 |
7.45 |
16.26 |
1.14 |
38.61 |
SRP_RNA |
1QZW |
183!D:221!D |
G:C |
WC [cWW][XIX] |
10.92 |
49.51; 46.62 |
2.89 |
-24.18 |
0.99 |
21.61 |
SRP_RNA |
1QZW |
184!D:220!D |
G:C |
WC [cWW][XIX] |
10.58 |
55.45; 52.81 |
2.64 |
-10.39 |
0.02 |
32.07 |
SRP_RNA |
1QZW |
185!D:219!D |
G:C |
WC [cWW][XIX] |
9.75 |
63.31; 62.8 |
0.51 |
-5.61 |
1.34 |
24.64 |
SRP_RNA |
1QZW |
192!D:215!D |
G:C |
WC [cWW][XIX] |
10.58 |
56.79; 56.97 |
0.19 |
0.2 |
0.23 |
19.27 |
SRP_RNA |
1QZW |
193!D:214!D |
G:C |
WC [cWW][XIX] |
10.86 |
53.89; 53.44 |
0.45 |
-1.29 |
0.17 |
5.79 |
SRP_RNA |
1QZW |
194!D:213!D |
C:A |
WC [---][-] |
10.4 |
59.97; 64.25 |
4.28 |
-14.42 |
0.07 |
18.14 |
SRP_RNA |
1QZW |
196!D:211!D |
A:C |
rH_1 [rWH][XXV] |
11.08 |
2.06; 26.59 |
24.53 |
-19.32 |
0.36 |
38.9 |
SRP_RNA |
1QZW |
196!D:210!D |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.09 |
32.14; 62.64 |
30.49 |
169.06 |
2.47 |
2.71 |
SRP_RNA |
1QZW |
197!D:210!D |
G:G |
S_1 [tSH][-] |
11.63 |
4.8; 78.75 |
73.94 |
-17.39 |
0.57 |
16.07 |
SRP_RNA |
1QZW |
199!D:208!D |
C:G |
WC [cWW][XIX] |
10.61 |
58.23; 58.04 |
0.19 |
-4.68 |
0.24 |
13.7 |
SRP_RNA |
1QZW |
200!D:207!D |
C:G |
WC [cWW][XIX] |
11.12 |
50.9; 49.07 |
1.83 |
-3.28 |
0.12 |
5.86 |
SRP_RNA |
1QZW |
201!D:206!D |
C:G |
WC [cWW][XIX] |
11.14 |
48.79; 50.0 |
1.21 |
16.7 |
0.43 |
14.03 |
SRP_RNA |
1QZW |
202!D:205!D |
G:A |
S [tSH][XI] |
8.83 |
89.15; 15.82 |
73.33 |
-91.46 |
1.31 |
8.32 |
SRP_RNA |
1QZW |
181!F:223!F |
C:G |
WC [cWW][XIX] |
10.49 |
44.91; 50.54 |
5.63 |
18.93 |
0.33 |
37.43 |
SRP_RNA |
1QZW |
182!F:222!F |
C:G |
WC [cWW][XIX] |
10.91 |
44.24; 51.68 |
7.44 |
16.3 |
1.14 |
38.62 |
SRP_RNA |
1QZW |
183!F:221!F |
G:C |
WC [cWW][XIX] |
10.92 |
49.52; 46.66 |
2.85 |
-24.09 |
0.99 |
21.61 |
SRP_RNA |
1QZW |
184!F:220!F |
G:C |
WC [cWW][XIX] |
10.58 |
55.45; 52.86 |
2.59 |
-10.44 |
0.02 |
32.04 |
SRP_RNA |
1QZW |
185!F:219!F |
G:C |
WC [cWW][XIX] |
9.75 |
63.29; 62.82 |
0.47 |
-5.63 |
1.33 |
24.68 |
SRP_RNA |
1QZW |
192!F:215!F |
G:C |
WC [cWW][XIX] |
10.58 |
56.79; 56.94 |
0.15 |
0.14 |
0.22 |
19.27 |
SRP_RNA |
1QZW |
193!F:214!F |
G:C |
WC [cWW][XIX] |
10.86 |
53.93; 53.41 |
0.52 |
-1.4 |
0.17 |
5.83 |
SRP_RNA |
1QZW |
194!F:213!F |
C:A |
WC [---][-] |
10.39 |
59.98; 64.27 |
4.29 |
-14.4 |
0.07 |
18.13 |
SRP_RNA |
1QZW |
196!F:211!F |
A:C |
rH_1 [rWH][XXV] |
11.08 |
2.04; 26.6 |
24.56 |
-19.34 |
0.36 |
38.91 |
SRP_RNA |
1QZW |
196!F:210!F |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.09 |
32.16; 62.57 |
30.41 |
169.06 |
2.47 |
2.79 |
SRP_RNA |
1QZW |
197!F:210!F |
G:G |
S_1 [tSH][-] |
11.63 |
4.77; 78.69 |
73.92 |
-17.85 |
0.57 |
16.09 |
SRP_RNA |
1QZW |
199!F:208!F |
C:G |
WC [cWW][XIX] |
10.61 |
58.25; 58.03 |
0.22 |
-4.75 |
0.25 |
13.69 |
SRP_RNA |
1QZW |
200!F:207!F |
C:G |
WC [cWW][XIX] |
11.12 |
50.87; 49.06 |
1.82 |
-3.31 |
0.12 |
5.89 |
SRP_RNA |
1QZW |
201!F:206!F |
C:G |
WC [cWW][XIX] |
11.14 |
48.79; 50.03 |
1.23 |
16.68 |
0.44 |
14.03 |
SRP_RNA |
1QZW |
202!F:205!F |
G:A |
S [tSH][XI] |
8.83 |
89.15; 15.8 |
73.35 |
-91.4 |
1.31 |
8.33 |
SRP_RNA |
1QZW |
181!H:223!H |
C:G |
WC [cWW][XIX] |
10.5 |
44.92; 50.58 |
5.67 |
18.92 |
0.33 |
37.36 |
SRP_RNA |
1QZW |
182!H:222!H |
C:G |
WC [cWW][XIX] |
10.91 |
44.23; 51.66 |
7.43 |
16.26 |
1.14 |
38.64 |
SRP_RNA |
1QZW |
183!H:221!H |
G:C |
WC [cWW][XIX] |
10.92 |
49.54; 46.63 |
2.9 |
-24.13 |
0.99 |
21.6 |
SRP_RNA |
1QZW |
184!H:220!H |
G:C |
WC [cWW][XIX] |
10.58 |
55.47; 52.81 |
2.66 |
-10.44 |
0.02 |
32.06 |
SRP_RNA |
1QZW |
185!H:219!H |
G:C |
WC [cWW][XIX] |
9.75 |
63.31; 62.82 |
0.49 |
-5.58 |
1.34 |
24.65 |
SRP_RNA |
1QZW |
192!H:215!H |
G:C |
WC [cWW][XIX] |
10.58 |
56.78; 56.97 |
0.18 |
0.21 |
0.22 |
19.29 |
SRP_RNA |
1QZW |
193!H:214!H |
G:C |
WC [cWW][XIX] |
10.86 |
53.89; 53.39 |
0.51 |
-1.29 |
0.17 |
5.83 |
SRP_RNA |
1QZW |
194!H:213!H |
C:A |
WC [---][-] |
10.4 |
59.98; 64.24 |
4.27 |
-14.41 |
0.07 |
18.11 |
SRP_RNA |
1QZW |
196!H:211!H |
A:C |
rH_1 [rWH][XXV] |
11.08 |
2.03; 26.58 |
24.55 |
-18.84 |
0.36 |
38.91 |
SRP_RNA |
1QZW |
196!H:210!H |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.09 |
32.17; 62.6 |
30.43 |
169.03 |
2.47 |
2.75 |
SRP_RNA |
1QZW |
197!H:210!H |
G:G |
S_1 [tSH][-] |
11.63 |
4.82; 78.72 |
73.9 |
-17.7 |
0.57 |
16.08 |
SRP_RNA |
1QZW |
199!H:208!H |
C:G |
WC [cWW][XIX] |
10.61 |
58.23; 58.03 |
0.19 |
-4.7 |
0.25 |
13.7 |
SRP_RNA |
1QZW |
200!H:207!H |
C:G |
WC [cWW][XIX] |
11.12 |
50.89; 49.06 |
1.83 |
-3.24 |
0.11 |
5.84 |
SRP_RNA |
1QZW |
201!H:206!H |
C:G |
WC [cWW][XIX] |
11.14 |
48.79; 50.03 |
1.24 |
16.67 |
0.43 |
14.01 |
SRP_RNA |
1QZW |
202!H:205!H |
G:A |
S [tSH][XI] |
8.83 |
89.19; 15.81 |
73.38 |
-91.46 |
1.31 |
8.31 |