Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1R9F BPC Identified: 19 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
siRNA 1R9F 1!B:19!C C:G WC [cWW][XIX] 10.83 52.5; 52.98 0.48 -4.16 0.24 8.51
siRNA 1R9F 2!B:18!C G:C WC [cWW][XIX] 10.58 55.46; 56.89 1.44 -3.52 0.18 10.43
siRNA 1R9F 3!B:17!C U:A WC [cWW][XX] 10.18 58.89; 60.45 1.56 0.11 0.11 7.19
siRNA 1R9F 4!B:16!C A:U WC [cWW][XX] 10.44 57.0; 56.74 0.26 -1.96 0.13 9.29
siRNA 1R9F 5!B:15!C C:G WC [cWW][XIX] 10.6 56.87; 56.39 0.48 -2.47 0.1 16.0
siRNA 1R9F 6!B:14!C G:C WC [cWW][XIX] 10.7 54.35; 55.32 0.97 -6.69 0.09 15.14
siRNA 1R9F 7!B:13!C C:G WC [cWW][XIX] 10.68 55.06; 54.24 0.81 -7.75 0.37 12.89
siRNA 1R9F 8!B:12!C G:C WC [cWW][XIX] 10.76 53.94; 53.95 0.01 -1.28 0.48 7.88
siRNA 1R9F 9!B:11!C G:C WC [cWW][XIX] 10.63 55.2; 56.91 1.71 -4.22 0.27 10.21
siRNA 1R9F 10!B:10!C A:U WC [cWW][XX] 10.38 57.45; 56.42 1.03 -11.4 0.16 14.02
siRNA 1R9F 11!B:9!C A:U WC [cWW][XX] 10.24 56.59; 58.45 1.86 -7.5 0.05 12.87
siRNA 1R9F 12!B:8!C U:A WC [cWW][XX] 10.46 55.46; 56.85 1.39 -8.23 0.25 9.44
siRNA 1R9F 13!B:7!C A:U WC [cWW][XX] 10.43 56.48; 56.94 0.46 -8.69 0.06 13.44
siRNA 1R9F 14!B:6!C C:G WC [cWW][XIX] 10.71 55.67; 54.46 1.21 -6.45 0.14 9.96
siRNA 1R9F 15!B:5!C U:A WC [cWW][XX] 10.38 57.57; 58.4 0.83 -6.69 0.26 13.5
siRNA 1R9F 16!B:4!C U:A WC [cWW][XX] 10.38 57.46; 58.08 0.62 -3.89 0.1 9.3
siRNA 1R9F 17!B:3!C C:G WC [cWW][XIX] 10.66 55.81; 55.38 0.43 -1.9 0.18 9.57
siRNA 1R9F 18!B:2!C G:C WC [cWW][XIX] 10.65 56.18; 54.49 1.7 -4.23 0.16 9.88
siRNA 1R9F 19!B:1!C A:U WC [cWW][XX] 10.68 54.9; 53.5 1.4 5.82 0.34 2.34