Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1RLG
BPC Identified: 23
Ambiguities: 0
| snoRNA |
1RLG |
1!C:25!C |
G:C |
WC [cWW][XIX] |
10.43 |
51.79; 59.72 |
7.93 |
-1.97 |
0.08 |
5.71 |
| snoRNA |
1RLG |
2!C:24!C |
C:G |
WC [cWW][XIX] |
10.51 |
56.64; 51.57 |
5.07 |
-2.94 |
0.16 |
8.14 |
| snoRNA |
1RLG |
3!C:23!C |
U:A |
H_1 [cWH][XXIII] |
9.93 |
60.31; 25.69 |
34.62 |
1.1 |
0.36 |
11.31 |
| snoRNA |
1RLG |
4!C:22!C |
C:G |
WC [cWW][XIX] |
10.6 |
61.5; 55.41 |
6.09 |
3.6 |
0.19 |
9.69 |
| snoRNA |
1RLG |
5!C:21!C |
U:U |
Wb [cWW][XVI] |
9.26 |
71.13; 41.66 |
29.47 |
-7.75 |
0.28 |
14.18 |
| snoRNA |
1RLG |
6!C:20!C |
G:A |
S [tSH][XI] |
8.85 |
105.18; 10.16 |
95.02 |
-40.0 |
0.02 |
23.66 |
| snoRNA |
1RLG |
7!C:19!C |
A:G |
S [tSH][XI] |
9.41 |
13.73; 103.28 |
89.55 |
-6.37 |
0.35 |
31.62 |
| snoRNA |
1RLG |
7!C:16!C |
A:C |
fS(sb:O2*-N1)_1 [tSS][-] |
8.74 |
54.1; 95.52 |
41.41 |
129.82 |
2.15 |
52.59 |
| snoRNA |
1RLG |
8!C:15!C |
C:G |
WC [cWW][XIX] |
10.74 |
53.9; 51.72 |
2.18 |
-0.38 |
0.1 |
7.95 |
| snoRNA |
1RLG |
9!C:14!C |
C:G |
WC [cWW][XIX] |
10.72 |
54.51; 51.65 |
2.86 |
1.18 |
0.16 |
1.21 |
| snoRNA |
1RLG |
10!C:13!C |
G:A |
S [tSH][XI] |
9.26 |
97.82; 10.97 |
86.85 |
-94.84 |
0.57 |
14.45 |
| snoRNA |
1RLG |
10!C:12!C |
G:A |
S(sb:O2*-N7) [---][-] |
7.61 |
92.98; 34.03 |
58.95 |
-168.72 |
2.18 |
28.53 |
| snoRNA |
1RLG |
1!D:25!D |
G:C |
WC [cWW][XIX] |
10.5 |
52.0; 56.51 |
4.52 |
3.6 |
0.19 |
4.8 |
| snoRNA |
1RLG |
2!D:24!D |
C:G |
WC [cWW][XIX] |
10.58 |
55.92; 51.53 |
4.39 |
-2.53 |
0.01 |
3.44 |
| snoRNA |
1RLG |
4!D:22!D |
C:G |
WC [cWW][XIX] |
10.53 |
60.44; 53.26 |
7.18 |
1.87 |
0.16 |
5.37 |
| snoRNA |
1RLG |
5!D:21!D |
U:U |
Wb [cWW][XVI] |
9.69 |
69.04; 37.7 |
31.34 |
-0.91 |
0.1 |
11.22 |
| snoRNA |
1RLG |
6!D:20!D |
G:A |
S [tSH][XI] |
9.26 |
103.29; 11.66 |
91.63 |
-37.68 |
0.54 |
19.97 |
| snoRNA |
1RLG |
7!D:19!D |
A:G |
S [tSH][XI] |
9.46 |
9.95; 103.24 |
93.29 |
-8.91 |
0.92 |
29.28 |
| snoRNA |
1RLG |
7!D:16!D |
A:C |
fS(sb:O2*-N1)_1 [tSS][-] |
8.74 |
51.74; 92.49 |
40.75 |
136.22 |
1.56 |
43.92 |
| snoRNA |
1RLG |
8!D:15!D |
C:G |
WC [cWW][XIX] |
10.31 |
58.66; 56.9 |
1.76 |
-2.37 |
0.09 |
5.72 |
| snoRNA |
1RLG |
9!D:14!D |
C:G |
WC [cWW][XIX] |
10.45 |
58.94; 55.86 |
3.08 |
7.38 |
0.04 |
8.04 |
| snoRNA |
1RLG |
10!D:13!D |
G:A |
S [tSH][XI] |
9.18 |
95.93; 7.55 |
88.38 |
-87.12 |
0.23 |
20.79 |
| snoRNA |
1RLG |
10!D:12!D |
G:A |
S(sb:O2*-N7) [---][-] |
7.57 |
91.07; 31.41 |
59.66 |
-165.97 |
1.67 |
30.76 |