Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1RY1 BPC Identified: 132 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
SRP_RNA 1RY1 100!E:147!E G:U Wb [cWW][XXVIII] 10.72 40.59; 63.13 22.54 -13.04 0.26 13.07
SRP_RNA 1RY1 101!E:146!E G:C WC [cWW][XIX] 10.89 47.78; 54.82 7.04 -7.04 0.08 8.28
SRP_RNA 1RY1 102!E:145!E C:G WC [cWW][XIX] 10.74 58.33; 57.74 0.59 -1.12 0.18 6.09
SRP_RNA 1RY1 103!E:144!E C:G WC [cWW][XIX] 10.87 51.37; 52.21 0.84 -8.27 0.25 6.59
SRP_RNA 1RY1 104!E:123!E G:U Wb [cWW][XXVIII] 10.23 46.93; 73.53 26.6 9.21 0.68 16.77
SRP_RNA 1RY1 105!E:122!E G:C WC [cWW][XIX] 10.51 53.54; 61.3 7.76 2.1 0.07 3.0
SRP_RNA 1RY1 106!E:121!E G:C WC [cWW][XIX] 10.61 54.82; 56.95 2.13 3.38 0.54 19.28
SRP_RNA 1RY1 107!E:120!E C:G WC [cWW][XIX] 10.58 57.33; 53.07 4.26 2.67 0.39 1.92
SRP_RNA 1RY1 108!E:119!E G:C WC [cWW][XIX] 10.68 54.72; 55.87 1.15 -1.79 0.03 4.29
SRP_RNA 1RY1 109!E:118!E C:G WC [cWW][XIX] 10.75 56.13; 54.69 1.44 2.36 0.17 3.69
SRP_RNA 1RY1 110!E:117!E G:C WC [cWW][XIX] 10.71 54.7; 54.7 0.0 10.69 0.06 13.37
SRP_RNA 1RY1 111!E:116!E G:G S_1 [tSH][-] 11.51 70.59; 15.63 54.96 114.6 1.79 31.15
SRP_RNA 1RY1 112!E:114!E U:G S(sb:O2*-N7)_1 [---][-] 6.66 76.59; 41.66 34.93 -163.19 0.11 39.56
SRP_RNA 1RY1 113!E:137!E G:C WC [cWW][XIX] 10.82 56.28; 51.98 4.3 2.26 0.62 15.69
SRP_RNA 1RY1 114!E:134!E G:C WC [cWW][XIX] 10.56 52.49; 59.82 7.33 10.61 0.08 8.39
SRP_RNA 1RY1 115!E:133!E C:G WC [cWW][XIX] 10.58 60.29; 50.94 9.35 13.1 0.39 20.1
SRP_RNA 1RY1 116!E:132!E G:A rS(sb:O2*-N1)_1 [---][-] 8.87 92.89; 49.04 43.85 104.92 1.1 86.71
SRP_RNA 1RY1 121!E:58!M C:G sWC [---][-] 9.65 92.76; 29.07 63.7 15.31 0.61 60.6
SRP_RNA 1RY1 125!E:292!!N U:C rS(ss:O2*-O2*) [---][-] 4.88 168.33; 149.8 18.53 61.77 1.99 65.23
SRP_RNA 1RY1 128!E:143!E U:A WC [cWW][XX] 10.7 57.73; 58.79 1.06 5.25 0.18 7.1
SRP_RNA 1RY1 129!E:142!E C:G WC [cWW][XIX] 10.74 56.07; 56.25 0.18 1.29 0.34 15.32
SRP_RNA 1RY1 130!E:141!E C:G WC [cWW][XIX] 10.6 54.56; 59.13 4.57 3.19 0.05 3.69
SRP_RNA 1RY1 131!E:140!E C:G WC [cWW][XIX] 10.6 59.09; 53.34 5.76 -2.61 0.19 9.1
SRP_RNA 1RY1 112!A:239!A G:C WC [cWW][XIX] 10.52 47.47; 57.1 9.63 -8.6 0.57 14.15
SRP_RNA 1RY1 113!A:238!A A:U WC [cWW][XX] 10.47 50.58; 56.09 5.51 -12.83 0.14 15.28
SRP_RNA 1RY1 114!A:237!A C:G WC [cWW][XIX] 10.74 46.9; 58.59 11.69 -12.76 0.55 11.03
SRP_RNA 1RY1 115!A:236!A A:U WC [cWW][XX] 10.42 56.61; 50.8 5.81 -17.71 0.15 29.04
SRP_RNA 1RY1 116!A:235!A C:G Wb [---][-] 10.68 62.05; 44.73 17.32 -10.34 0.33 14.62
SRP_RNA 1RY1 117!A:234!A U:A WC [cWW][XX] 10.46 55.23; 43.94 11.3 -11.23 0.26 17.94
SRP_RNA 1RY1 119!A:231!A A:A WC [---][-] 10.93 79.05; 69.72 9.33 -12.35 0.83 24.06
SRP_RNA 1RY1 120!A:230!A G:C WC [cWW][XIX] 9.68 58.85; 71.55 12.7 -9.51 0.43 18.8
SRP_RNA 1RY1 121!A:229!A U:U Wb [cWW][XVI] 8.63 51.94; 76.37 24.43 -13.63 0.52 19.29
SRP_RNA 1RY1 122!A:228!A U:A WC [cWW][XX] 10.02 61.23; 67.9 6.67 -11.8 0.23 17.0
SRP_RNA 1RY1 123!A:227!A C:G WC [cWW][XIX] 11.47 53.89; 43.35 10.54 -11.04 0.09 21.1
SRP_RNA 1RY1 124!A:226!A G:U Wb [cWW][XXVIII] 10.1 41.48; 81.1 39.61 -6.69 0.06 11.06
SRP_RNA 1RY1 125!A:225!A G:C WC [cWW][XIX] 10.86 58.69; 44.68 14.01 -1.22 0.54 17.68
SRP_RNA 1RY1 126!A:224!A C:G WC [cWW][XIX] 10.26 63.01; 51.88 11.13 -10.43 0.08 13.85
SRP_RNA 1RY1 127!A:223!A A:U WC [cWW][XX] 10.81 55.81; 52.41 3.4 -17.13 0.69 28.22
SRP_RNA 1RY1 127!A:173!A A:A rS(sb:O2*-N1)_1 [tSS][-] 8.77 94.48; 55.63 38.85 139.7 0.55 39.39
SRP_RNA 1RY1 128!A:222!A U:G Wb [cWW][XXVIII] 10.7 56.47; 37.41 19.06 -15.08 0.08 18.89
SRP_RNA 1RY1 129!A:168!A C:G WC [cWW][XIX] 11.35 41.76; 46.22 4.46 -44.73 0.23 52.28
SRP_RNA 1RY1 130!A:167!A A:U WC [cWW][XX] 10.23 57.62; 60.73 3.11 -33.11 0.18 41.54
SRP_RNA 1RY1 131!A:166!A A:U Wb* [---][-] 11.1 60.43; 40.22 20.21 -7.92 0.51 35.58
SRP_RNA 1RY1 132!A:165!A U:G Wb [cWW][XXVIII] 10.65 59.61; 49.1 10.51 -6.04 0.43 7.31
SRP_RNA 1RY1 133!A:164!A A:G Wb [---][-] 12.86 41.84; 66.82 24.99 -9.48 0.43 16.69
SRP_RNA 1RY1 134!A:163!A U:A WC [cWW][XX] 10.83 56.52; 63.64 7.12 -16.65 0.3 19.88
SRP_RNA 1RY1 135!A:162!A G:C WC [cWW][XIX] 10.64 48.93; 57.1 8.17 -9.09 0.31 7.98
SRP_RNA 1RY1 136!A:214!A G:A rS [tSS][-] 8.32 85.72; 57.01 28.72 151.38 1.19 27.16
SRP_RNA 1RY1 136!A:161!A G:C WC [cWW][XIX] 10.37 53.16; 54.47 1.31 -10.22 0.21 19.52
SRP_RNA 1RY1 137!A:160!A U:A WC [cWW][XX] 10.32 54.48; 56.8 2.33 -5.2 0.21 11.64
SRP_RNA 1RY1 138!A:159!A G:C WC [cWW][XIX] 10.4 54.74; 56.72 1.98 -4.39 0.54 5.94
SRP_RNA 1RY1 139!A:158!A A:C WC [---][-] 10.44 58.68; 60.09 1.4 -7.27 0.91 3.91
SRP_RNA 1RY1 140!A:157!A C:A Wb [cWW][-] 10.11 72.22; 56.48 15.74 -2.2 0.21 11.86
SRP_RNA 1RY1 141!A:156!A C:G Wb [---][-] 10.8 60.98; 48.26 12.72 -4.66 0.33 11.24
SRP_RNA 1RY1 142!A:155!A U:G Wb [cWW][XXVIII] 10.1 70.02; 46.08 23.94 3.45 0.39 6.57
SRP_RNA 1RY1 143!A:154!A C:G WC [cWW][XIX] 10.56 55.69; 59.86 4.17 -3.46 0.31 11.97
SRP_RNA 1RY1 144!A:153!A C:G WC [cWW][XIX] 10.57 49.6; 59.63 10.04 -1.41 0.35 18.76
SRP_RNA 1RY1 145!A:152!A C:G WC [cWW][XIX] 10.33 56.1; 55.2 0.9 2.63 0.05 10.16
SRP_RNA 1RY1 146!A:151!A G:C WC [cWW][XIX] 10.32 59.37; 56.14 3.23 1.35 0.18 18.57
SRP_RNA 1RY1 149!A:201!A A:A rWb* [tWW][I] 13.83 29.87; 23.74 6.13 160.67 0.52 22.43
SRP_RNA 1RY1 149!A:197!A A:G pfS(sb:O2*-N3) [---][-] 5.87 96.79; 143.15 46.36 -24.5 1.36 17.63
SRP_RNA 1RY1 150!A:203!A G:G rS(sb:O2*-N3) [---][-] 5.02 98.09; 100.38 2.3 -136.66 0.21 34.97
SRP_RNA 1RY1 150!A:202!A G:C rS [tSS][-] 8.8 80.19; 68.78 11.41 -145.63 0.45 31.13
SRP_RNA 1RY1 150!A:197!A G:G rpS [cSS][-] 4.4 119.0; 101.62 17.38 116.54 0.36 33.29
SRP_RNA 1RY1 161!A:214!A C:A rpS(bs:O2-O2*) [cSS][-] 5.62 107.42; 143.51 36.09 -38.99 1.23 7.65
SRP_RNA 1RY1 162!A:213!A C:A rpS(sb:O2*-N3) [cSS][-] 5.99 155.02; 86.41 68.61 -41.89 1.29 39.64
SRP_RNA 1RY1 173!A:223!A A:U rpS(ss:O2*-O2*)_1 [---][-] 6.76 126.21; 104.59 21.62 -57.57 2.67 11.97
SRP_RNA 1RY1 175!A:221!A G:C WC [cWW][XIX] 10.69 60.02; 44.74 15.28 -13.48 0.14 16.47
SRP_RNA 1RY1 177!A:220!A G:C WC [cWW][XIX] 10.6 49.61; 53.55 3.95 -1.25 0.14 3.73
SRP_RNA 1RY1 178!A:219!A G:C WC [cWW][XIX] 10.51 56.84; 49.21 7.63 -8.2 0.28 11.13
SRP_RNA 1RY1 179!A:218!A G:U Wb [cWW][XXVIII] 10.51 36.43; 65.93 29.5 -9.48 0.25 8.37
SRP_RNA 1RY1 180!A:217!A G:C WC [cWW][XIX] 10.39 49.92; 55.85 5.93 -7.6 0.24 10.29
SRP_RNA 1RY1 181!A:216!A U:A WC [cWW][XX] 10.68 57.77; 48.21 9.56 -7.47 0.15 11.09
SRP_RNA 1RY1 182!A:215!A G:A S [tSH][XI] 9.95 94.45; 9.99 84.46 -28.01 0.09 8.03
SRP_RNA 1RY1 187!A:212!A G:C WC [cWW][XIX] 10.54 52.46; 52.51 0.05 -3.63 0.29 8.02
SRP_RNA 1RY1 188!A:211!A G:U Wb [cWW][XXVIII] 10.26 40.89; 65.55 24.66 -9.5 0.24 17.8
SRP_RNA 1RY1 189!A:210!A C:G WC [cWW][XIX] 10.89 46.77; 55.25 8.48 -8.85 0.06 14.86
SRP_RNA 1RY1 190!A:209!A C:G WC [cWW][XIX] 10.61 55.96; 51.49 4.47 0.9 0.03 2.52
SRP_RNA 1RY1 191!A:208!A C:A S [tSH][-] 9.91 77.42; 2.61 74.82 -18.19 0.93 8.55
SRP_RNA 1RY1 192!A:207!A A:C rH_1 [rWH][XXV] 10.91 6.5; 23.45 16.95 -160.05 0.22 13.6
SRP_RNA 1RY1 192!A:206!A A:G S(bp:N1-O2P)_2 [---][-] 12.05 36.99; 60.41 23.42 159.13 2.35 10.33
SRP_RNA 1RY1 193!A:206!A G:G S_1 [tSH][-] 11.54 4.49; 79.09 74.6 26.49 0.11 12.98
SRP_RNA 1RY1 194!A:205!A G:A WC [cWW][VIII] 12.76 44.88; 49.74 4.87 -2.36 0.21 16.2
SRP_RNA 1RY1 195!A:204!A U:G Wb [cWW][XXVIII] 10.52 59.25; 41.02 18.23 -11.26 0.69 16.71
SRP_RNA 1RY1 196!A:203!A C:G WC [cWW][XIX] 10.45 51.35; 50.56 0.79 -7.73 0.1 9.0
SRP_RNA 1RY1 197!A:202!A G:C WC [cWW][XIX] 10.49 55.24; 47.87 7.37 3.97 0.28 8.25
SRP_RNA 1RY1 198!A:201!A G:A S [tSH][XI] 8.91 95.36; 13.81 81.55 -81.77 0.26 25.04
SRP_RNA 1RY1 198!A:200!A G:A S(sb:O2*-N7) [---][-] 7.52 87.0; 36.36 50.63 -167.17 2.67 35.32
SRP_RNA 1RY1 239!A:242R C:C rS(ss:O2*-O2*)_1 [---][-] 5.61 144.97; 131.46 13.51 -132.51 0.03 58.5
SRP_RNA 1RY1 49!M:297!N A:U WC [cWW][XX] 10.73 53.78; 53.82 0.04 8.11 0.03 11.79
SRP_RNA 1RY1 50!M:296!N G:C WC [cWW][XIX] 10.73 53.83; 53.83 0.0 8.1 0.04 11.78
SRP_RNA 1RY1 51!M:295!N G:U WC [---][-] 10.73 53.83; 53.78 0.05 8.03 0.02 11.77
SRP_RNA 1RY1 52!M:294!N C:G WC [cWW][XIX] 10.73 53.78; 53.7 0.09 8.08 0.03 11.88
SRP_RNA 1RY1 54!M:292!N G:C WC [cWW][XIX] 11.02 52.41; 52.38 0.03 10.35 0.24 10.96
SRP_RNA 1RY1 55!M:291!N G:C WC [cWW][XIX] 11.02 52.42; 52.36 0.06 10.31 0.24 10.89
SRP_RNA 1RY1 55!M:57!M G:G pS_1 [cSH][-] 10.68 100.16; 35.77 64.4 -46.19 1.29 40.11
SRP_RNA 1RY1 60!M:287!N U:A WC [cWW][XX] 10.73 53.87; 53.83 0.03 8.06 0.02 11.79
SRP_RNA 1RY1 61!M:286!N C:G WC [cWW][XIX] 10.73 53.82; 53.8 0.02 8.0 0.04 11.74
SRP_RNA 1RY1 62!M:285!N G:C WC [cWW][XIX] 10.73 53.78; 53.82 0.03 8.05 0.04 11.8
SRP_RNA 1RY1 63!M:284!N C:G WC [cWW][XIX] 10.73 53.75; 53.82 0.07 8.03 0.04 11.82
SRP_RNA 1RY1 64!M:283!N U:A WC [cWW][XX] 10.73 53.82; 53.81 0.0 8.1 0.02 11.78
SRP_RNA 1RY1 68!M:277!N G:C WC [cWW][XIX] 10.73 53.83; 53.8 0.03 8.1 0.03 11.81
SRP_RNA 1RY1 69!M:276!N U:G WC [---][-] 10.73 53.77; 53.82 0.05 8.18 0.02 11.81
SRP_RNA 1RY1 71!M:274!N C:G WC [cWW][XIX] 10.73 53.87; 53.81 0.05 8.16 0.04 11.79
SRP_RNA 1RY1 72!M:273!N A:U WC [cWW][XX] 10.73 53.82; 53.76 0.07 8.1 0.02 11.9
SRP_RNA 1RY1 73!M:272!N G:C WC [cWW][XIX] 10.73 53.76; 53.76 0.0 8.0 0.04 11.75
SRP_RNA 1RY1 74!M:271!N G:C WC [cWW][XIX] 10.73 53.75; 53.73 0.02 8.1 0.04 11.84
SRP_RNA 1RY1 79!O:270!P C:G WC [cWW][XIX] 10.73 53.82; 53.75 0.07 8.05 0.04 11.79
SRP_RNA 1RY1 80!O:269!P U:A WC [cWW][XX] 10.73 53.84; 53.85 0.01 7.97 0.02 11.79
SRP_RNA 1RY1 81!O:268!P G:C WC [cWW][XIX] 10.73 53.83; 53.8 0.04 8.16 0.04 11.86
SRP_RNA 1RY1 82!O:267!P G:C WC [cWW][XIX] 10.73 53.81; 53.79 0.01 8.06 0.04 11.79
SRP_RNA 1RY1 83!O:266!P G:U WC [---][-] 10.73 53.82; 53.84 0.02 8.06 0.03 11.69
SRP_RNA 1RY1 85!O:264!P U:A WC [cWW][XX] 10.73 53.76; 53.81 0.04 8.18 0.02 11.83
SRP_RNA 1RY1 86!O:263!P G:C WC [cWW][XIX] 10.73 53.8; 53.81 0.01 7.96 0.03 11.86
SRP_RNA 1RY1 87!O:262!P U:G WC [---][-] 10.73 53.76; 53.78 0.02 8.05 0.03 11.82
SRP_RNA 1RY1 88!O:261!P A:U WC [cWW][XX] 10.73 53.82; 53.77 0.05 8.19 0.03 11.84
SRP_RNA 1RY1 89!O:260!P G:C WC [cWW][XIX] 10.73 53.8; 53.82 0.02 8.08 0.04 11.82
SRP_RNA 1RY1 90!O:259!P U:A WC [cWW][XX] 10.74 53.76; 53.8 0.04 8.14 0.03 11.81
SRP_RNA 1RY1 91!O:258!P G:C WC [cWW][XIX] 10.73 53.78; 53.83 0.05 8.1 0.04 11.83
SRP_RNA 1RY1 93!O:257!P G:C WC [cWW][XIX] 10.73 53.79; 53.77 0.02 8.12 0.04 11.85
SRP_RNA 1RY1 94!O:256!P C:G WC [cWW][XIX] 10.73 53.81; 53.78 0.03 8.18 0.04 11.8
SRP_RNA 1RY1 95!O:255!P U:A WC [cWW][XX] 10.73 53.77; 53.83 0.06 8.1 0.02 11.89
SRP_RNA 1RY1 96!O:254!P A:U WC [cWW][XX] 10.73 53.8; 53.83 0.03 8.1 0.02 11.74
SRP_RNA 1RY1 97!O:253!P U:A WC [cWW][XX] 10.73 53.85; 53.89 0.04 8.06 0.03 11.66
SRP_RNA 1RY1 100!Q:101!Q C:G rS(sp:O2*-O1P) [---][-] 8.3 144.54; 105.72 38.82 -173.67 0.87 21.29
SRP_RNA 1RY1 102!Q:250!R A:U WC [cWW][XX] 10.73 53.75; 53.84 0.09 8.03 0.02 11.76
SRP_RNA 1RY1 103!Q:249!R U:G WC [---][-] 10.73 53.76; 53.74 0.01 8.02 0.02 11.81
SRP_RNA 1RY1 105!Q:248!R G:U WC [---][-] 10.73 53.81; 53.81 0.0 8.08 0.02 11.75
SRP_RNA 1RY1 106!Q:247!R G:C WC [cWW][XIX] 10.73 53.74; 53.8 0.06 8.08 0.04 11.87
SRP_RNA 1RY1 107!Q:246!R G:C WC [cWW][XIX] 10.73 53.85; 53.81 0.04 8.08 0.03 11.82
SRP_RNA 1RY1 108!Q:245!R U:G WC [---][-] 10.73 53.78; 53.82 0.04 8.05 0.03 11.79
SRP_RNA 1RY1 109!Q:244!R G:C WC [cWW][XIX] 10.73 53.87; 53.81 0.05 8.18 0.03 11.8