Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1SA9
BPC Identified: 24
Ambiguities: 0
| dsRNA |
1SA9 |
101!A:116!B |
G:C |
WC [cWW][XIX] |
10.58 |
48.77; 56.28 |
7.51 |
-10.54 |
0.18 |
11.67 |
| dsRNA |
1SA9 |
102!A:115!B |
G:C |
Wb [---][-] |
9.76 |
46.7; 75.68 |
28.98 |
-16.5 |
0.17 |
28.13 |
| dsRNA |
1SA9 |
103!A:114!B |
C:G |
WC [cWW][XIX] |
10.53 |
52.8; 55.41 |
2.6 |
-10.57 |
0.02 |
17.37 |
| dsRNA |
1SA9 |
104!A:113!B |
G:A |
S [tSH][XI] |
9.3 |
91.17; 8.65 |
82.53 |
-36.25 |
0.61 |
17.75 |
| dsRNA |
1SA9 |
105!A:112!B |
A:G |
S [tSH][XI] |
9.72 |
10.12; 93.16 |
83.04 |
0.51 |
0.05 |
5.22 |
| dsRNA |
1SA9 |
106!A:111!B |
G:C |
WC [cWW][XIX] |
10.26 |
53.73; 53.77 |
0.04 |
-2.37 |
0.01 |
9.76 |
| dsRNA |
1SA9 |
107!A:110!B |
C:G |
WC [cWW][XIX] |
10.36 |
52.46; 56.03 |
3.57 |
-4.72 |
0.28 |
4.43 |
| dsRNA |
1SA9 |
108!A:109!B |
C:G |
WC [cWW][XIX] |
10.43 |
53.53; 50.69 |
2.84 |
-8.99 |
0.42 |
13.81 |
| dsRNA |
1SA9 |
201!C:216!D |
G:C |
WC [cWW][XIX] |
10.69 |
48.6; 55.35 |
6.76 |
-10.33 |
0.47 |
20.38 |
| dsRNA |
1SA9 |
202!C:215!D |
G:C |
WC [cWW][XIX] |
10.33 |
50.36; 54.67 |
4.32 |
-1.19 |
0.13 |
5.49 |
| dsRNA |
1SA9 |
203!C:214!D |
C:G |
WC [cWW][XIX] |
10.32 |
52.75; 55.27 |
2.53 |
-3.13 |
0.05 |
10.48 |
| dsRNA |
1SA9 |
204!C:213!D |
G:A |
S [tSH][XI] |
9.56 |
95.94; 10.34 |
85.59 |
-19.92 |
0.39 |
11.84 |
| dsRNA |
1SA9 |
205!C:212!D |
A:G |
S [tSH][XI] |
9.83 |
9.14; 87.31 |
78.17 |
123.77 |
0.75 |
3.75 |
| dsRNA |
1SA9 |
206!C:211!D |
G:C |
WC [cWW][XIX] |
10.65 |
49.07; 53.47 |
4.41 |
-5.7 |
0.42 |
17.32 |
| dsRNA |
1SA9 |
207!C:210!D |
C:G |
WC [cWW][XIX] |
10.38 |
56.3; 55.43 |
0.87 |
-4.89 |
0.28 |
6.3 |
| dsRNA |
1SA9 |
208!C:209!D |
C:G |
WC [cWW][XIX] |
10.93 |
54.46; 50.07 |
4.39 |
2.0 |
0.29 |
8.99 |
| dsRNA |
1SA9 |
301!E:308!F |
G:C |
WC [cWW][XIX] |
10.18 |
48.31; 60.77 |
12.46 |
-6.12 |
0.37 |
8.95 |
| dsRNA |
1SA9 |
302!E:307!F |
G:C |
WC [cWW][XIX] |
10.28 |
55.55; 56.3 |
0.75 |
-2.69 |
0.08 |
5.45 |
| dsRNA |
1SA9 |
303!E:306!F |
C:G |
WC [cWW][XIX] |
9.98 |
55.72; 55.95 |
0.24 |
-7.26 |
0.39 |
11.72 |
| dsRNA |
1SA9 |
304!E:305!F |
G:A |
S [tSH][XI] |
9.14 |
99.08; 8.64 |
90.44 |
-24.94 |
0.17 |
11.66 |
| dsRNA |
1SA9 |
305!E:304!F |
A:G |
S [tSH][XI] |
9.14 |
8.64; 99.08 |
90.44 |
-24.94 |
0.17 |
11.66 |
| dsRNA |
1SA9 |
306!E:303!F |
G:C |
WC [cWW][XIX] |
9.98 |
55.95; 55.72 |
0.24 |
-7.26 |
0.39 |
11.72 |
| dsRNA |
1SA9 |
307!E:302!F |
C:G |
WC [cWW][XIX] |
10.28 |
56.3; 55.55 |
0.75 |
-2.69 |
0.08 |
5.45 |
| dsRNA |
1SA9 |
308!E:301!F |
C:G |
WC [cWW][XIX] |
10.18 |
60.77; 48.31 |
12.46 |
-6.12 |
0.37 |
8.95 |