Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1SDR
BPC Identified: 24
Ambiguities: 0
| dsRNA |
1SDR |
1!A:24!B |
U:A |
WC [cWW][XX] |
10.3 |
54.56; 59.21 |
4.66 |
-9.17 |
0.21 |
13.73 |
| dsRNA |
1SDR |
2!A:23!B |
A:U |
WC [cWW][XX] |
10.26 |
58.49; 49.96 |
8.53 |
-6.18 |
0.27 |
9.9 |
| dsRNA |
1SDR |
3!A:22!B |
A:U |
WC [cWW][XX] |
10.54 |
55.88; 52.25 |
3.63 |
-8.98 |
0.6 |
20.46 |
| dsRNA |
1SDR |
4!A:21!B |
G:C |
WC [cWW][XIX] |
10.15 |
57.84; 56.62 |
1.22 |
-11.78 |
0.0 |
16.13 |
| dsRNA |
1SDR |
5!A:20!B |
G:C |
WC [cWW][XIX] |
10.42 |
54.31; 54.45 |
0.14 |
-8.89 |
0.08 |
10.36 |
| dsRNA |
1SDR |
6!A:19!B |
A:U |
WC [cWW][XX] |
10.62 |
49.13; 53.46 |
4.33 |
-6.19 |
0.2 |
7.61 |
| dsRNA |
1SDR |
7!A:18!B |
G:C |
WC [cWW][XIX] |
10.96 |
50.24; 44.54 |
5.71 |
-5.16 |
0.19 |
13.16 |
| dsRNA |
1SDR |
8!A:17!B |
G:C |
WC [cWW][XIX] |
10.36 |
54.3; 51.19 |
3.1 |
-16.9 |
0.13 |
19.63 |
| dsRNA |
1SDR |
9!A:16!B |
U:A |
WC [cWW][XX] |
10.15 |
53.85; 57.63 |
3.78 |
-12.38 |
0.01 |
14.54 |
| dsRNA |
1SDR |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.62 |
57.66; 48.53 |
9.13 |
-6.27 |
0.22 |
12.99 |
| dsRNA |
1SDR |
11!A:14!B |
A:U |
WC [cWW][XX] |
10.84 |
53.54; 47.37 |
6.17 |
-15.41 |
0.33 |
18.33 |
| dsRNA |
1SDR |
12!A:13!B |
U:A |
WC [cWW][XX] |
10.65 |
49.68; 49.52 |
0.16 |
-10.93 |
0.28 |
17.01 |
| dsRNA |
1SDR |
25!C:48!D |
U:A |
WC [cWW][XX] |
10.55 |
52.31; 52.37 |
0.06 |
-11.6 |
0.02 |
12.02 |
| dsRNA |
1SDR |
26!C:47!D |
A:U |
WC [cWW][XX] |
10.51 |
55.51; 53.5 |
2.01 |
-12.63 |
0.19 |
12.94 |
| dsRNA |
1SDR |
27!C:46!D |
A:U |
WC [cWW][XX] |
10.23 |
52.84; 55.05 |
2.21 |
-10.95 |
0.11 |
13.0 |
| dsRNA |
1SDR |
28!C:45!D |
G:C |
WC [cWW][XIX] |
10.53 |
49.55; 56.39 |
6.85 |
-11.54 |
0.09 |
11.26 |
| dsRNA |
1SDR |
29!C:44!D |
G:C |
WC [cWW][XIX] |
10.67 |
56.23; 49.51 |
6.72 |
-7.41 |
0.2 |
11.08 |
| dsRNA |
1SDR |
30!C:43!D |
A:U |
WC [cWW][XX] |
10.43 |
55.88; 52.58 |
3.29 |
-5.62 |
0.03 |
3.66 |
| dsRNA |
1SDR |
31!C:42!D |
G:C |
WC [cWW][XIX] |
10.54 |
58.53; 51.5 |
7.03 |
-10.95 |
0.05 |
9.62 |
| dsRNA |
1SDR |
32!C:41!D |
G:C |
WC [cWW][XIX] |
10.61 |
50.89; 51.18 |
0.29 |
-11.99 |
0.23 |
17.44 |
| dsRNA |
1SDR |
33!C:40!D |
U:A |
WC [cWW][XX] |
10.35 |
58.19; 52.79 |
5.4 |
-16.7 |
0.36 |
26.06 |
| dsRNA |
1SDR |
34!C:39!D |
G:C |
WC [cWW][XIX] |
10.73 |
47.57; 50.55 |
2.97 |
-11.26 |
0.01 |
14.05 |
| dsRNA |
1SDR |
35!C:38!D |
A:U |
WC [cWW][XX] |
10.47 |
55.64; 52.1 |
3.54 |
-9.21 |
0.09 |
16.61 |
| dsRNA |
1SDR |
36!C:37!D |
U:A |
WC [cWW][XX] |
9.98 |
58.96; 52.55 |
6.41 |
-13.87 |
0.01 |
17.93 |