Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1SER BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1SER 4!T:69!T G:C WC [cWW][XIX] 10.55 51.99; 56.17 4.19 -7.06 0.2 11.56
tRNA 1SER 5!T:68!T A:U WC [cWW][XX] 10.51 55.84; 52.88 2.95 -9.53 0.17 16.61
tRNA 1SER 6!T:67!T G:C WC [cWW][XIX] 10.79 51.16; 49.63 1.53 -12.36 0.45 19.25
tRNA 1SER 7!T:66!T G:C WC [cWW][XIX] 10.74 47.24; 53.09 5.85 -6.51 0.05 9.88
tRNA 1SER 8!T:21!T U:A fS(sb:O2*-N1) [tSW][-] 8.87 96.84; 56.25 40.59 138.84 0.69 45.76
tRNA 1SER 8!T:14!T U:A rH_1 [tWH][XXIV] 9.72 33.28; 16.34 16.95 153.9 0.71 19.06
tRNA 1SER 9!T:13!T G:G rH_1 [tWH][VII] 10.98 34.04; 29.7 4.33 106.33 1.61 39.35
tRNA 1SER 10!T:25!T C:G WC [cWW][XIX] 11.08 57.93; 51.33 6.6 -6.77 0.27 11.3
tRNA 1SER 11!T:24!T C:G Wb [---][-] 10.59 64.83; 50.78 14.05 -4.39 0.14 12.62
tRNA 1SER 12!T:23!T C:G WC [cWW][XIX] 11.0 50.73; 53.78 3.04 -10.48 0.21 11.99
tRNA 1SER 13!T:22!T G:A S [tSH][XI] 9.29 98.95; 11.5 87.45 -36.8 0.0 11.29
tRNA 1SER 14!T:21!T A:A S [tSH][-] 9.87 38.4; 109.66 71.26 -23.76 0.56 44.9
tRNA 1SER 15!T:48!T G:C rWb [tWW][XXII] 10.71 37.17; 57.1 19.94 -163.69 0.03 12.09
tRNA 1SER 15!T:20A!T G:U fS*_1 [tWS][-] 7.61 102.68; 18.88 83.81 -138.2 0.9 31.92
tRNA 1SER 18!T:55!T G:U fS_PSU [---][-] 9.29 21.78; 119.8 98.02 -145.6 0.01 15.68
tRNA 1SER 19!T:56!T G:C WC [cWW][XIX] 10.35 55.49; 51.63 3.86 -18.27 0.56 24.33
tRNA 1SER 45!T:47Q!T A:U WC [cWW][XX] 10.45 54.35; 54.95 0.6 6.1 0.15 14.08
tRNA 1SER 46!T:47P!T G:C WC [cWW][XIX] 10.7 54.05; 51.21 2.85 -2.95 0.11 2.34
tRNA 1SER 47!T:47O!T G:C WC [cWW][XIX] 11.09 55.32; 47.35 7.97 -2.95 0.03 4.29
tRNA 1SER 47A!T:47N!T G:C WC [cWW][XIX] 10.56 54.51; 53.46 1.06 -5.92 0.0 20.04
tRNA 1SER 47B!T:47M!T G:U Wb [cWW][XXVIII] 10.4 42.55; 72.38 29.83 -11.6 0.04 11.57
tRNA 1SER 47C!T:47L!T G:C WC [cWW][XIX] 10.86 49.39; 50.75 1.36 -7.92 0.24 16.92
tRNA 1SER 47D!T:47K!T G:C WC [cWW][XIX] 10.41 58.99; 58.54 0.45 -8.16 0.79 4.21
tRNA 1SER 49!T:65!T G:C WC [cWW][XIX] 10.54 49.05; 55.93 6.88 -6.86 0.29 12.64
tRNA 1SER 50!T:64!T C:G WC [cWW][XIX] 10.37 54.48; 54.73 0.25 -8.03 0.09 15.5
tRNA 1SER 51!T:63!T G:C WC [cWW][XIX] 10.38 55.98; 53.86 2.12 -7.44 0.12 6.26
tRNA 1SER 52!T:62!T G:C WC [cWW][XIX] 10.53 52.59; 54.85 2.27 -4.98 0.08 6.36
tRNA 1SER 53!T:61!T G:C WC [cWW][XIX] 10.35 54.05; 56.87 2.82 -5.72 0.4 13.34
tRNA 1SER 54!T:58!T U:A rH_1 [tWH][XXIV] 10.0 24.76; 16.86 7.9 174.79 0.32 13.02
tRNA 1SER 55!T:57!T U:G S_PSU(sb:O2*-N7) [---][-] 6.96 86.25; 43.98 42.27 -172.56 1.93 27.04