Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1SJ3 BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1SJ3 101!R:137!R G:U Wb [cWW][XXVIII] 10.37 37.42; 70.12 32.7 -3.7 0.1 17.09
HDV_ribozyme 1SJ3 102!R:136!R G:C WC [cWW][XIX] 10.39 58.35; 59.52 1.18 0.83 0.01 0.6
HDV_ribozyme 1SJ3 103!R:135!R C:G WC [cWW][XIX] 10.58 61.02; 58.92 2.1 12.48 0.24 11.12
HDV_ribozyme 1SJ3 104!R:134!R C:G WC [cWW][XIX] 10.48 60.27; 57.12 3.15 7.95 0.29 6.47
HDV_ribozyme 1SJ3 105!R:133!R G:C WC [cWW][XIX] 10.26 55.91; 60.45 4.54 -0.12 0.2 6.28
HDV_ribozyme 1SJ3 106!R:132!R G:C WC [cWW][XIX] 10.18 53.28; 61.49 8.21 -1.43 0.17 11.79
HDV_ribozyme 1SJ3 107!R:131!R C:G WC [cWW][XIX] 10.6 58.91; 53.32 5.58 3.0 0.19 10.35
HDV_ribozyme 1SJ3 111!R:172!R G:C WC [cWW][XIX] 10.83 53.93; 59.15 5.23 -10.33 0.27 14.92
HDV_ribozyme 1SJ3 112!R:171!R U:A WC [cWW][XX] 10.64 53.12; 54.72 1.6 -9.36 0.24 8.12
HDV_ribozyme 1SJ3 113!R:170!R C:G WC [cWW][XIX] 10.73 48.73; 53.62 4.89 -7.5 0.44 17.09
HDV_ribozyme 1SJ3 114!R:169!R C:G WC [cWW][XIX] 10.52 56.75; 53.12 3.63 -5.75 0.03 10.34
HDV_ribozyme 1SJ3 115!R:168!R C:G WC [cWW][XIX] 10.89 47.22; 56.81 9.58 -4.37 0.06 7.54
HDV_ribozyme 1SJ3 116!R:167!R A:U WC [cWW][XX] 10.38 54.87; 56.47 1.6 -5.04 0.09 5.98
HDV_ribozyme 1SJ3 117!R:130!R G:C WC [cWW][XIX] 10.59 57.28; 55.91 1.37 -11.94 0.03 17.5
HDV_ribozyme 1SJ3 118!R:166!R C:A rpS(bs:O2-O2*) [cSS][-] 5.31 102.05; 155.78 53.74 -40.15 0.88 15.89
HDV_ribozyme 1SJ3 118!R:129!R C:G WC [cWW][XIX] 10.63 53.63; 54.55 0.92 -12.58 0.06 17.86
HDV_ribozyme 1SJ3 119!R:165!R C:A rpS(sb:O2*-N3) [cSS][-] 5.57 149.53; 94.66 54.87 -47.7 0.47 18.92
HDV_ribozyme 1SJ3 119!R:128!R C:G WC [cWW][XIX] 10.95 47.54; 51.2 3.66 -16.27 0.01 17.23
HDV_ribozyme 1SJ3 120!R:125!R U:G rH_2 [---][-] 11.73 19.26; 9.37 9.89 15.0 0.09 1.76
HDV_ribozyme 1SJ3 121!R:142!R C:A pfS [cSW][-] 9.34 119.89; 31.87 88.02 -12.3 0.18 33.2
HDV_ribozyme 1SJ3 121!R:139!R C:G WC [cWW][XIX] 10.82 46.72; 53.84 7.12 -19.05 0.47 29.59
HDV_ribozyme 1SJ3 122!R:138!R C:G WC [cWW][XIX] 10.73 52.68; 55.46 2.78 -4.68 0.02 10.52
HDV_ribozyme 1SJ3 129!R:166!R G:A rS [tSS][-] 8.17 83.7; 58.42 25.28 160.61 0.77 33.7
HDV_ribozyme 1SJ3 140!R:142!R G:A pS_1 [cSH][-] 7.99 137.73; 27.29 110.45 -28.32 0.37 48.74
HDV_ribozyme 1SJ3 141!R:161!R C:G rH_1 [tWH][-] 11.23 17.4; 4.87 12.52 -167.31 0.19 2.76
HDV_ribozyme 1SJ3 143!R:162!R A:G WC [cWW][VIII] 12.29 48.69; 52.49 3.8 -16.34 0.48 22.07
HDV_ribozyme 1SJ3 144!R:161!R C:G WC [cWW][XIX] 10.66 56.76; 54.26 2.5 -15.15 0.64 23.52
HDV_ribozyme 1SJ3 145!R:160!R A:U WC [cWW][XX] 10.28 56.71; 58.52 1.81 -12.89 0.13 13.84
HDV_ribozyme 1SJ3 146!R:159!R C:G WC [cWW][XIX] 10.54 56.41; 55.71 0.7 -10.45 0.23 15.4
HDV_ribozyme 1SJ3 147!R:158!R C:G WC [cWW][XIX] 10.71 54.68; 53.35 1.33 -1.83 0.03 5.13