Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1SJ4 BPC Identified: 31 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1SJ4 101!R:137!R G:U Wb [cWW][XXVIII] 10.26 39.41; 69.55 30.14 0.37 0.04 12.07
HDV_ribozyme 1SJ4 102!R:136!R G:C WC [cWW][XIX] 10.23 58.17; 61.47 3.3 1.79 0.07 8.0
HDV_ribozyme 1SJ4 103!R:135!R C:G WC [cWW][XIX] 10.45 59.11; 54.9 4.21 13.07 0.07 25.1
HDV_ribozyme 1SJ4 104!R:134!R C:G WC [cWW][XIX] 10.38 60.9; 56.69 4.2 6.56 0.03 13.42
HDV_ribozyme 1SJ4 105!R:133!R G:C WC [cWW][XIX] 10.26 55.2; 62.11 6.92 -1.27 0.05 8.28
HDV_ribozyme 1SJ4 106!R:132!R G:C WC [cWW][XIX] 10.23 55.93; 61.01 5.08 -4.33 0.25 16.08
HDV_ribozyme 1SJ4 107!R:131!R C:G WC [cWW][XIX] 10.6 58.02; 53.38 4.65 1.85 0.14 9.7
HDV_ribozyme 1SJ4 111!R:172!R G:C WC [cWW][XIX] 10.65 54.29; 57.5 3.21 -9.64 0.28 14.38
HDV_ribozyme 1SJ4 112!R:171!R U:A WC [cWW][XX] 10.58 53.38; 56.59 3.2 -9.46 0.38 14.54
HDV_ribozyme 1SJ4 113!R:170!R C:G WC [cWW][XIX] 10.74 49.68; 52.3 2.61 -11.34 0.45 25.7
HDV_ribozyme 1SJ4 114!R:169!R C:G WC [cWW][XIX] 10.47 58.18; 53.01 5.18 -3.28 0.04 7.56
HDV_ribozyme 1SJ4 115!R:168!R C:G WC [cWW][XIX] 11.02 48.31; 53.45 5.14 -2.15 0.04 6.3
HDV_ribozyme 1SJ4 116!R:167!R A:U WC [cWW][XX] 10.24 57.27; 58.83 1.56 -6.57 0.02 7.7
HDV_ribozyme 1SJ4 117!R:130!R G:C WC [cWW][XIX] 10.58 54.53; 57.7 3.17 -10.79 0.04 14.46
HDV_ribozyme 1SJ4 118!R:166!R C:A rpS(bs:O2-O2*) [cSS][-] 5.36 106.64; 151.74 45.1 -40.18 0.62 16.56
HDV_ribozyme 1SJ4 118!R:129!R C:G WC [cWW][XIX] 10.46 56.13; 55.51 0.62 -18.46 0.08 23.03
HDV_ribozyme 1SJ4 119!R:165!R C:A rpS(sb:O2*-N3) [cSS][-] 5.65 155.15; 92.51 62.64 -46.42 0.06 19.95
HDV_ribozyme 1SJ4 119!R:128!R C:G WC [cWW][XIX] 10.84 50.11; 50.68 0.57 -17.14 0.05 18.83
HDV_ribozyme 1SJ4 120!R:163!R U:U pS [cSH][-] 6.59 143.48; 42.14 101.34 65.39 1.85 51.18
HDV_ribozyme 1SJ4 120!R:125!R U:G rH_2 [---][-] 11.54 20.34; 9.07 11.27 16.79 0.26 1.37
HDV_ribozyme 1SJ4 121!R:142!R C:A pfS [cSW][-] 9.24 121.54; 31.83 89.71 -11.25 0.34 35.42
HDV_ribozyme 1SJ4 121!R:139!R C:G WC [cWW][XIX] 10.75 50.41; 53.2 2.79 -17.73 0.28 22.74
HDV_ribozyme 1SJ4 122!R:138!R C:G WC [cWW][XIX] 10.53 55.6; 54.75 0.86 -5.77 0.04 10.33
HDV_ribozyme 1SJ4 129!R:166!R G:A rS [tSS][-] 8.26 85.88; 57.8 28.08 159.66 1.1 38.66
HDV_ribozyme 1SJ4 140!R:142!R G:A pS_1 [cSH][-] 7.63 140.0; 27.42 112.58 -26.69 0.49 49.42
HDV_ribozyme 1SJ4 141!R:161!R C:G rH_1 [tWH][-] 11.01 19.83; 6.52 13.31 -142.48 0.05 5.94
HDV_ribozyme 1SJ4 143!R:162!R A:G WC [cWW][VIII] 12.48 48.25; 49.44 1.19 -1.83 0.67 16.81
HDV_ribozyme 1SJ4 144!R:161!R C:G WC [cWW][XIX] 10.5 56.64; 54.35 2.29 -17.32 0.35 20.36
HDV_ribozyme 1SJ4 145!R:160!R A:U WC [cWW][XX] 10.27 57.91; 56.33 1.58 -13.45 0.15 17.34
HDV_ribozyme 1SJ4 146!R:159!R C:G WC [cWW][XIX] 10.5 56.79; 54.1 2.69 -10.63 0.11 12.45
HDV_ribozyme 1SJ4 147!R:158!R C:G WC [cWW][XIX] 10.59 55.28; 53.11 2.17 0.68 0.08 1.72