Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1SJF BPC Identified: 31 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1SJF 101!B:137!B G:U Wb [cWW][XXVIII] 10.9 34.21; 63.44 29.23 8.39 0.19 8.1
HDV_ribozyme 1SJF 102!B:136!B G:C WC [cWW][XIX] 10.41 58.45; 59.97 1.52 9.9 0.65 8.08
HDV_ribozyme 1SJF 103!B:135!B C:G WC [cWW][XIX] 10.78 55.86; 55.97 0.11 15.93 0.49 15.03
HDV_ribozyme 1SJF 104!B:134!B C:G WC [cWW][XIX] 10.61 55.93; 52.63 3.3 14.87 0.06 15.52
HDV_ribozyme 1SJF 105!B:133!B G:C WC [cWW][XIX] 10.22 55.69; 60.48 4.78 -2.75 0.35 10.93
HDV_ribozyme 1SJF 106!B:132!B G:C WC [cWW][XIX] 10.23 51.52; 61.15 9.63 -0.98 0.07 11.43
HDV_ribozyme 1SJF 107!B:131!B C:G WC [cWW][XIX] 10.57 56.07; 53.36 2.71 5.89 0.09 9.12
HDV_ribozyme 1SJF 111!B:172!B G:C WC [cWW][XIX] 10.74 58.7; 56.38 2.33 -10.92 0.43 16.54
HDV_ribozyme 1SJF 112!B:171!B U:A WC [cWW][XX] 10.73 52.36; 49.94 2.41 -6.63 0.01 13.82
HDV_ribozyme 1SJF 113!B:170!B C:G WC [cWW][XIX] 10.74 52.96; 53.64 0.68 -0.16 0.07 10.56
HDV_ribozyme 1SJF 114!B:169!B C:G WC [cWW][XIX] 10.7 55.19; 49.61 5.58 -3.56 0.07 9.53
HDV_ribozyme 1SJF 115!B:168!B C:G WC [cWW][XIX] 10.58 54.15; 53.09 1.06 -0.61 0.2 4.8
HDV_ribozyme 1SJF 116!B:167!B A:U WC [cWW][XX] 10.08 56.6; 60.44 3.84 -7.26 0.08 7.38
HDV_ribozyme 1SJF 117!B:130!B G:C WC [cWW][XIX] 10.46 55.98; 57.53 1.54 -15.48 0.07 22.36
HDV_ribozyme 1SJF 118!B:166!B C:A rpS(bs:O2-O2*) [cSS][-] 5.39 103.28; 151.33 48.06 -39.57 2.09 10.77
HDV_ribozyme 1SJF 118!B:129!B C:G WC [cWW][XIX] 10.43 53.98; 56.2 2.22 -16.19 0.09 23.47
HDV_ribozyme 1SJF 119!B:165!B C:A rpS(sb:O2*-N3) [cSS][-] 5.72 150.71; 92.44 58.26 -52.63 0.62 17.61
HDV_ribozyme 1SJF 119!B:128!B C:G WC [cWW][XIX] 10.69 49.02; 54.05 5.03 -20.05 0.25 16.97
HDV_ribozyme 1SJF 120!B:163!B U:U pS [cSH][-] 6.84 142.62; 42.72 99.9 56.24 2.14 43.2
HDV_ribozyme 1SJF 120!B:125!B U:G rH_2 [---][-] 11.38 19.33; 10.15 9.19 51.18 0.9 2.62
HDV_ribozyme 1SJF 121!B:142!B C:A pfS [cSW][-] 9.05 121.02; 36.51 84.51 -11.59 0.57 24.13
HDV_ribozyme 1SJF 121!B:139!B C:G WC [cWW][XIX] 10.86 49.61; 53.37 3.75 -15.09 0.95 28.45
HDV_ribozyme 1SJF 122!B:138!B C:G WC [cWW][XIX] 10.6 52.81; 54.53 1.71 -6.36 0.22 11.39
HDV_ribozyme 1SJF 129!B:166!B G:A rS [tSS][-] 8.12 86.88; 56.38 30.49 161.61 0.66 32.55
HDV_ribozyme 1SJF 140!B:142!B G:A pS_1 [cSH][-] 7.75 141.77; 23.69 118.08 -20.63 0.59 46.46
HDV_ribozyme 1SJF 141!B:161!B C:G rH_1 [tWH][-] 11.09 20.03; 5.5 14.53 -148.47 0.01 3.16
HDV_ribozyme 1SJF 143!B:162!B A:G WC [cWW][VIII] 12.33 48.73; 56.83 8.1 -14.45 0.74 24.94
HDV_ribozyme 1SJF 144!B:161!B C:G WC [cWW][XIX] 10.68 54.5; 55.05 0.56 -12.18 0.04 14.56
HDV_ribozyme 1SJF 145!B:160!B A:U WC [cWW][XX] 10.24 57.68; 57.09 0.6 -13.85 0.11 16.95
HDV_ribozyme 1SJF 146!B:159!B C:G WC [cWW][XIX] 10.43 57.21; 54.21 3.0 -6.01 0.05 15.32
HDV_ribozyme 1SJF 147!B:158!B C:G WC [cWW][XIX] 10.67 55.24; 51.34 3.91 0.73 0.11 1.33