Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1T0D
BPC Identified: 29
Ambiguities: 0
| rRNA |
1T0D |
1!A:34!B |
G:C |
WC [cWW][XIX] |
10.68 |
54.55; 54.17 |
0.38 |
-3.1 |
0.15 |
7.76 |
| rRNA |
1T0D |
2!A:33!B |
G:C |
WC [cWW][XIX] |
10.43 |
53.63; 56.17 |
2.54 |
-7.17 |
0.51 |
15.25 |
| rRNA |
1T0D |
3!A:32!B |
U:A |
WC [cWW][XX] |
10.53 |
56.17; 54.09 |
2.08 |
-7.16 |
0.07 |
8.17 |
| rRNA |
1T0D |
4!A:26!D |
G:C |
rS(sp:O2*-O1P) [---][-] |
7.24 |
117.74; 139.14 |
21.4 |
138.49 |
1.12 |
24.18 |
| rRNA |
1T0D |
4!A:31!B |
G:C |
WC [cWW][XIX] |
10.56 |
54.08; 54.82 |
0.74 |
-9.0 |
0.01 |
13.31 |
| rRNA |
1T0D |
5!A:30!B |
G:C |
WC [cWW][XIX] |
10.51 |
53.61; 54.15 |
0.53 |
-10.66 |
0.3 |
17.07 |
| rRNA |
1T0D |
6!A:29!B |
U:A |
WC [cWW][XX] |
10.16 |
61.14; 56.25 |
4.89 |
-13.47 |
0.24 |
20.15 |
| rRNA |
1T0D |
7!A:28!B |
G:C |
WC [cWW][XIX] |
10.6 |
52.2; 55.27 |
3.07 |
-11.54 |
0.13 |
13.88 |
| rRNA |
1T0D |
10!A:26!B |
G:C |
WC [cWW][XIX] |
10.54 |
55.26; 54.5 |
0.76 |
-3.87 |
0.2 |
8.04 |
| rRNA |
1T0D |
11!A:25!B |
U:U |
Wb [cWW][XVI] |
8.65 |
74.84; 45.9 |
28.94 |
-8.85 |
0.07 |
10.67 |
| rRNA |
1T0D |
12!A:24!B |
C:G |
WC [cWW][XIX] |
10.2 |
65.06; 56.52 |
8.54 |
-11.46 |
0.45 |
17.45 |
| rRNA |
1T0D |
13!A:23!B |
G:C |
WC [cWW][XIX] |
10.45 |
55.38; 56.61 |
1.23 |
-3.95 |
0.09 |
13.74 |
| rRNA |
1T0D |
14!A:22!B |
C:G |
WC [cWW][XIX] |
10.4 |
58.46; 51.61 |
6.85 |
-13.93 |
0.12 |
17.89 |
| rRNA |
1T0D |
15!A:21!B |
U:A |
WC [cWW][XX] |
10.25 |
58.03; 54.33 |
3.71 |
-8.07 |
0.12 |
7.51 |
| rRNA |
1T0D |
16!A:20!B |
G:C |
WC [cWW][XIX] |
10.58 |
54.51; 56.5 |
1.99 |
-11.46 |
0.01 |
15.14 |
| rRNA |
1T0D |
1!C:34!D |
G:C |
WC [cWW][XIX] |
10.73 |
52.15; 52.42 |
0.27 |
-8.8 |
0.0 |
10.88 |
| rRNA |
1T0D |
2!C:33!D |
G:C |
WC [cWW][XIX] |
10.35 |
55.91; 57.98 |
2.06 |
-8.94 |
0.5 |
20.35 |
| rRNA |
1T0D |
3!C:32!D |
U:A |
WC [cWW][XX] |
10.84 |
52.05; 52.48 |
0.43 |
-3.75 |
0.02 |
11.21 |
| rRNA |
1T0D |
4!C:31!D |
G:C |
WC [cWW][XIX] |
10.61 |
53.9; 53.99 |
0.1 |
-6.88 |
0.26 |
11.91 |
| rRNA |
1T0D |
5!C:30!D |
G:C |
WC [cWW][XIX] |
10.44 |
57.28; 56.3 |
0.97 |
-8.73 |
0.4 |
21.53 |
| rRNA |
1T0D |
6!C:29!D |
U:A |
WC [cWW][XX] |
10.42 |
57.59; 54.92 |
2.67 |
-13.07 |
0.25 |
17.22 |
| rRNA |
1T0D |
7!C:28!D |
G:C |
WC [cWW][XIX] |
10.56 |
54.37; 54.99 |
0.62 |
-16.49 |
0.44 |
11.87 |
| rRNA |
1T0D |
10!C:26!D |
G:C |
WC [cWW][XIX] |
10.46 |
53.86; 56.47 |
2.61 |
-0.49 |
0.14 |
6.59 |
| rRNA |
1T0D |
11!C:25!D |
U:U |
Wb [cWW][XVI] |
9.13 |
68.41; 43.05 |
25.36 |
-13.98 |
0.08 |
15.49 |
| rRNA |
1T0D |
12!C:24!D |
C:G |
WC [cWW][XIX] |
10.35 |
58.32; 57.11 |
1.21 |
-2.92 |
0.03 |
10.38 |
| rRNA |
1T0D |
13!C:23!D |
G:C |
WC [cWW][XIX] |
10.62 |
54.42; 54.54 |
0.12 |
-5.64 |
0.14 |
11.43 |
| rRNA |
1T0D |
14!C:22!D |
C:G |
WC [cWW][XIX] |
10.6 |
56.24; 53.12 |
3.11 |
-9.46 |
0.08 |
11.08 |
| rRNA |
1T0D |
15!C:21!D |
U:A |
WC [cWW][XX] |
10.33 |
56.53; 55.0 |
1.53 |
-4.22 |
0.2 |
9.33 |
| rRNA |
1T0D |
16!C:20!D |
G:C |
WC [cWW][XIX] |
10.55 |
55.03; 54.06 |
0.97 |
-12.81 |
0.78 |
24.8 |