Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1T0K
BPC Identified: 14
Ambiguities: 0
| mRNA |
1T0K |
6!C:64!D |
G:C |
WC [cWW][XIX] |
10.73 |
57.08; 50.72 |
6.35 |
-22.05 |
0.02 |
21.5 |
| mRNA |
1T0K |
7!C:63!D |
A:U |
WC [cWW][XX] |
10.45 |
56.78; 57.06 |
0.28 |
-8.7 |
0.93 |
21.0 |
| mRNA |
1T0K |
8!C:62!D |
C:G |
WC [cWW][XIX] |
10.54 |
55.12; 53.57 |
1.55 |
-14.24 |
0.02 |
30.34 |
| mRNA |
1T0K |
9!C:61!D |
C:G |
WC [cWW][XIX] |
10.51 |
55.1; 59.68 |
4.59 |
-16.12 |
0.01 |
15.73 |
| mRNA |
1T0K |
10!C:60!D |
G:U |
S*_1 [tHS][-] |
11.62 |
83.61; 12.81 |
70.81 |
148.44 |
0.16 |
21.97 |
| mRNA |
1T0K |
11!C:59!D |
G:A |
S [tSH][XI] |
10.06 |
83.87; 15.59 |
68.28 |
-120.22 |
0.07 |
19.43 |
| mRNA |
1T0K |
12!C:58!D |
A:G |
S [tSH][XI] |
9.58 |
2.45; 98.98 |
96.53 |
15.26 |
2.21 |
49.31 |
| mRNA |
1T0K |
12!C:55!D |
A:A |
fS(sb:O2*-N1)_1 [---][-] |
8.75 |
52.51; 101.54 |
49.03 |
135.18 |
1.26 |
46.53 |
| mRNA |
1T0K |
13!C:59!D |
G:A |
rS [tSS][-] |
6.94 |
90.75; 61.4 |
29.36 |
-154.98 |
1.81 |
65.68 |
| mRNA |
1T0K |
13!C:54!D |
G:C |
WC [cWW][XIX] |
10.64 |
59.09; 49.52 |
9.58 |
-0.98 |
0.58 |
15.79 |
| mRNA |
1T0K |
14!C:53!D |
U:G |
Wb [cWW][XXVIII] |
10.8 |
65.13; 42.02 |
23.11 |
-12.88 |
0.12 |
14.86 |
| mRNA |
1T0K |
15!C:52!D |
G:C |
WC [cWW][XIX] |
11.16 |
49.23; 41.07 |
8.16 |
-28.65 |
0.27 |
28.41 |
| mRNA |
1T0K |
16!C:51!D |
U:A |
WC [cWW][XX] |
11.03 |
49.0; 41.85 |
7.15 |
-26.76 |
0.01 |
27.38 |
| mRNA |
1T0K |
17!C:50!D |
C:G |
WC [cWW][XIX] |
10.41 |
59.0; 55.29 |
3.71 |
-9.11 |
0.92 |
20.13 |